Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3402 and BT3403 are separated by 2 nucleotidesBT3403 and BT3404 are separated by 52 nucleotidesBT3404 and BT3405 are separated by 79 nucleotidesBT3405 and BT3406 overlap by 23 nucleotides BT3402: BT3402 - conserved hypothetical protein (NCBI ptt file), at 4,381,447 to 4,381,914 BT3402 BT3403: BT3403 - putative nitrogen utilization substance protein (NCBI ptt file), at 4,381,917 to 4,383,236 BT3403 BT3404: BT3404 - translation initiation factor IF-2 (NCBI ptt file), at 4,383,289 to 4,386,411 BT3404 BT3405: BT3405 - conserved hypothetical protein (NCBI ptt file), at 4,386,491 to 4,387,021 BT3405 BT3406: BT3406 - ABC transporter permease (NCBI ptt file), at 4,386,999 to 4,388,453 BT3406
Group Condition BT3402 BT3403 BT3404 BT3405 BT3406
mouse Post-dosage t1 (Day 1) - Cage1C;Mouse1 N.D. N.D. N.D. -2.8 N.D.
carbon source Red Arabinan from sugar-beet (C) N.D. N.D. N.D. -2.5 N.D.
carbon source carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml N.D. N.D. N.D. -2.4 N.D.
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 N.D. N.D. N.D. -2.4 N.D.
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 N.D. N.D. N.D. -2.2 N.D.
stress 0.15 mM H2O2 in BHI+1x protoporphyrin, cultured for 20 hours. N.D. N.D. N.D. -2.1 N.D.
mouse_post_colonization Post-colonization (Day 1) - Cage7;Mouse2 N.D. N.D. N.D. -2.1 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse4 N.D. N.D. N.D. -2.1 N.D.
mouse Post-colonization (Day 7) - Cage1C;Mouse2 N.D. N.D. N.D. -2.0 N.D.
stress Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM N.D. N.D. N.D. -2.0 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage1;Mouse4 N.D. N.D. N.D. -2.0 N.D.
stress BHIS with Doxycycline hyclate 0.000390625 mM N.D. N.D. N.D. -2.0 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 N.D. N.D. N.D. -2.0 N.D.
carbon source Lactulose 20mM (C) N.D. N.D. N.D. -1.9 N.D.
stress Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.05 mM N.D. N.D. N.D. -1.8 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 N.D. N.D. N.D. -1.8 N.D.
stress BHIS with Deoxycholic 0.2 mg/ml N.D. N.D. N.D. -1.8 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage4;Mouse4 N.D. N.D. N.D. -1.8 N.D.
carbon source carbon source Oat flour B-glucan 10 mg/ml N.D. N.D. N.D. -1.8 N.D.
stress Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM N.D. N.D. N.D. -1.8 N.D.
stress Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.05 vol% N.D. N.D. N.D. -1.8 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse2 N.D. N.D. N.D. -1.7 N.D.
carbon source carbon source Mucin from porcine stomach type III 10 mg/ml N.D. N.D. N.D. -1.7 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage5;Mouse5 N.D. N.D. N.D. -1.7 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 N.D. N.D. N.D. -1.7 N.D.
stress BHIS with 2-Mercaptopyridine N-oxide 0.1 mM N.D. N.D. N.D. -1.7 N.D.
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. N.D. -1.7 N.D.
carbon source carbon source Mucin from porcine stomach type III 10 mg/ml N.D. N.D. N.D. -1.7 N.D.
carbon source Red Arabinan from sugar-beet N.D. N.D. N.D. -1.6 N.D.
phage SJC15_cps8_1MOI N.D. N.D. N.D. +1.7 N.D.
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