Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3347 and BT3348 are separated by 604 nucleotidesBT3348 and BT3349 are separated by 106 nucleotidesBT3349 and BT3350 are separated by 138 nucleotidesBT3350 and BT3351 are separated by 123 nucleotides BT3347: BT3347 - hypothetical protein (NCBI ptt file), at 4,314,241 to 4,315,650 BT3347 BT3348: BT3348 - unsaturated glucuronide lyase acting on chondroitin/heparin disaccharides (EC 3.2.1.180) (from data), at 4,316,255 to 4,317,457 BT3348 BT3349: BT3349 - chondroitin disaccharide sulfatase (from data), at 4,317,564 to 4,319,090 BT3349 BT3350: BT3350 - putative chondroitinase (chondroitin lyase) (NCBI ptt file), at 4,319,229 to 4,322,090 BT3350 BT3351: BT3351 - cysteinyl-tRNA synthetase (NCBI ptt file), at 4,322,214 to 4,323,695 BT3351
Group Condition BT3347 BT3348 BT3349 BT3350 BT3351
carbon source Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) +0.2 -2.9 -2.9 -1.2 N.D.
carbon source Chondroitin sulfate A from bovine trachea; filtered 2.5 mg/ml (C) +0.1 -3.0 -2.4 -1.4 N.D.
carbon source Chondroitin sulfate A from bovine trachea (C) -0.4 -2.6 -2.4 -0.5 N.D.
carbon source Chondroitin sulfate A from bovine trachea (C) -0.2 -2.9 -2.1 -0.6 N.D.
mouse_coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.3 -3.8 -0.4 -0.1 N.D.
mouse_coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.2 -3.5 -0.4 -0.1 N.D.
mouse_coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.2 -3.4 -0.4 -0.2 N.D.
carbon source Hyaluronic from Streptococcus equi (C) -0.2 -3.1 -0.3 -0.2 N.D.
mouse_coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.0 -3.4 -0.2 -0.1 N.D.
mouse_coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.2 -3.1 -0.2 -0.1 N.D.
carbon source carbon source Mucin from porcine stomach type III 10 mg/ml -0.1 -3.0 -0.4 -0.1 N.D.
carbon source Hyaluronic from Streptococcus equi (C) -0.4 -3.2 +0.1 -0.1 N.D.
carbon source carbon source Mucin from porcine stomach type III 10 mg/ml +0.1 -2.9 -0.4 -0.2 N.D.
carbon source Hyaluronic from Streptococcus equi -0.4 -2.6 +0.2 -0.7 N.D.
survival aerobic shaking 48 hr copy B -1.1 -1.8 -0.1 -0.4 N.D.
phage DAC15 _cps3_0.1MOI -0.3 -1.7 -0.8 -0.3 N.D.
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 +0.1 -2.8 -0.2 -0.1 N.D.
mouse_coculture cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 +0.1 -3.1 -0.1 +0.0 N.D.
mouse_coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 +0.0 -2.5 -0.3 +0.1 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 -0.4 -2.4 +0.3 +0.0 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse3 -0.5 -2.1 +0.2 -0.2 N.D.
carbon source Hyaluronic from Streptococcus equi +0.1 -2.7 +0.5 -0.4 N.D.
carbon source Heparin from porcine intestinal mucosa (C) +0.5 -2.2 +0.0 -0.7 N.D.
carbon source Heparin from porcine intestinal mucosa (C) +0.5 -2.0 -0.2 -0.8 N.D.
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 -0.5 -2.0 +0.7 +0.1 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse4 -0.3 -1.9 +0.6 +0.1 N.D.
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 +0.6 -2.5 +0.7 -0.3 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse2 +0.5 -2.1 +0.8 +0.0 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 +0.4 -1.4 +1.2 +0.2 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.1 +1.3 -0.8 +0.1 N.D.
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