Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3341 and BT3342 are separated by 40 nucleotidesBT3342 and BT3343 are separated by 5 nucleotidesBT3343 and BT3344 are separated by 305 nucleotidesBT3344 and BT3345 are separated by 28 nucleotides BT3341: BT3341 - conserved hypothetical protein (NCBI ptt file), at 4,304,569 to 4,306,497 BT3341 BT3342: BT3342 - hypothetical protein (NCBI ptt file), at 4,306,538 to 4,307,317 BT3342 BT3343: BT3343 - putative phenylacetic acid degradation protein (NCBI ptt file), at 4,307,323 to 4,307,727 BT3343 BT3344: BT3344 - hypothetical protein (NCBI ptt file), at 4,308,033 to 4,309,043 BT3344 BT3345: BT3345 - conserved hypothetical protein, putative outer membrane protein (NCBI ptt file), at 4,309,072 to 4,311,111 BT3345
Group Condition BT3341 BT3342 BT3343 BT3344 BT3345
carbon source dextran, Mw ~200,000 (C) N.D. -2.1 -0.6 -0.3 -0.3
mouse_post_colonization Post-colonization (Day 10) - Cage2;Mouse1 N.D. -3.0 -0.4 -0.0 +0.2
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 N.D. -2.4 -0.2 +0.1 -0.0
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 N.D. -2.4 -0.4 -0.0 +0.2
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse1 N.D. -2.7 -0.3 +0.1 +0.2
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse5 N.D. -2.1 -0.5 +0.1 +0.1
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse1 N.D. -2.0 -0.7 +0.4 +0.1
stress BHIS with Fusidic 0.002 mg/ml N.D. -1.7 -1.0 +0.5 -0.1
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 N.D. -1.6 -1.0 +0.3 +0.1
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 N.D. -1.8 -1.0 +0.3 +0.3
mouse_post_colonization Post-colonization (Day 12) - Cage3;Mouse1 N.D. -2.1 -0.4 +0.1 +0.1
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse5 N.D. -2.1 -0.4 +0.3 +0.1
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 N.D. -2.0 -0.3 +0.3 -0.2
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 N.D. -1.8 -0.7 +0.3 +0.2
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 N.D. -1.3 -1.3 +0.6 +0.1
mouse_recovery_after_peg Post-colonization (Day 14) - Cage4;Mouse2 N.D. -1.4 -0.9 +0.1 +0.3
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse1 N.D. -2.2 -0.3 +0.5 +0.3
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse3 N.D. -1.9 -0.3 +0.2 +0.3
carbon source (+)-Arabinogalactan (C) N.D. -2.0 +0.5 -0.0 -0.2
mouse_post_colonization Post-colonization (Day 8) - Cage4;Mouse5 N.D. -2.1 +0.3 +0.2 -0.1
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse2 N.D. -1.5 -0.6 +0.3 +0.2
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 N.D. -2.2 +0.3 +0.2 +0.1
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 N.D. -1.2 -0.9 +0.7 -0.2
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse1 N.D. -2.3 +0.1 +0.3 +0.4
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse5 N.D. -1.9 -0.2 +0.2 +0.4
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 N.D. -1.4 -0.9 +0.5 +0.3
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 N.D. -1.8 -0.3 +0.5 +0.2
mouse_post_colonization Post-colonization (Day 8) - Cage7;Mouse2 N.D. -1.6 -0.3 +0.4 +0.4
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) N.D. -1.3 +0.8 -0.2 -0.3
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM N.D. -1.5 +0.8 +0.1 +0.3
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