Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3295 and BT3296 are separated by 18 nucleotidesBT3296 and BT3297 are separated by 10 nucleotidesBT3297 and BT3298 are separated by 20 nucleotidesBT3298 and BT3299 are separated by 42 nucleotides BT3295: BT3295 - hypothetical protein (NCBI ptt file), at 4,221,509 to 4,222,513 BT3295 BT3296: BT3296 - conserved hypothetical protein, putative outer membrane protein (NCBI ptt file), at 4,222,532 to 4,224,556 BT3296 BT3297: BT3297 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 4,224,567 to 4,227,647 BT3297 BT3298: BT3298 - conserved hypothetical protein, with a conserved domain (NCBI ptt file), at 4,227,668 to 4,229,080 BT3298 BT3299: BT3299 - alpha-glucosidase II (NCBI ptt file), at 4,229,123 to 4,231,174 BT3299
Group Condition BT3295 BT3296 BT3297 BT3298 BT3299
carbon source Mannan from Saccharomyces cerevisiae (C) -0.5 -0.4 +0.1 -0.0 -0.4
phage SJC12_cps8_0.1MOI -0.6 -0.1 -0.3 -0.3 +0.0
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.5 -0.3 -0.2 +0.0 -0.2
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM -0.5 -0.4 +0.3 -0.5 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.7 +0.1 -0.1 +0.2 +0.1
stress BHIS with Simvastatin 30 uM -0.3 +0.1 -0.1 -0.3 +0.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.6 +0.4 +0.1 +0.0 +0.1
stress BHIS with Chenodeoxycholic 0.25 mg/ml -0.1 +0.3 +0.0 -0.3 +0.3
stress BHIS with Lithocholic 0.4 mg/ml -0.4 +0.2 +0.2 -0.1 +0.4
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 -0.0 +0.3 -0.2 +0.5 +0.2
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 +0.4 +0.0 -0.3 +0.4 +0.3
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 +0.4 +0.5 -0.2 -0.0 +0.2
mouse_post_colonization Post-colonization (Day 8) - Cage7;Mouse1 +0.5 +0.2 -0.0 +0.1 +0.3
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse3 +0.2 +0.3 +0.1 +0.2 +0.2
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse5 +0.2 +0.3 +0.0 +0.3 +0.2
mouse_post_colonization Post-colonization (Day 6) - Cage7;Mouse1 +0.4 +0.3 +0.1 +0.1 +0.3
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse1 +0.4 +0.4 -0.1 +0.4 +0.2
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 +0.4 +0.4 -0.1 +0.4 +0.1
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse1 +0.4 +0.2 +0.1 +0.3 +0.2
mouse_post_colonization Post-colonization (Day 14) - Cage4;Mouse4 +0.3 +0.5 -0.1 +0.4 +0.2
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 +0.3 +0.4 -0.1 +0.7 +0.1
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse1 +0.3 +0.3 +0.1 +0.3 +0.4
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 +0.4 +0.4 -0.1 +0.6 +0.2
mouse_peg_treatment PEG (Day 2) - Cage5;Mouse1 +0.4 +0.3 -0.0 +0.5 +0.3
mouse_post_colonization Post-colonization (Day 14) - Cage5;Mouse1 +0.6 +0.3 -0.1 +0.3 +0.4
mouse_recovery_after_peg Post-colonization (Day 14) - Cage4;Mouse2 +0.5 +0.3 -0.2 +0.4 +0.7
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse1 +0.4 +0.3 +0.1 +0.5 +0.5
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 +0.5 +0.6 -0.0 +0.5 +0.3
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 +0.4 +0.6 +0.0 +0.5 +0.5
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 +0.6 +0.3 -0.0 +0.6 +0.6
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