Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3293 and BT3294 are separated by 102 nucleotidesBT3294 and BT3295 are separated by 275 nucleotidesBT3295 and BT3296 are separated by 18 nucleotidesBT3296 and BT3297 are separated by 10 nucleotides BT3293: BT3293 - beta-galactosidase (NCBI ptt file), at 4,214,913 to 4,219,178 BT3293 BT3294: BT3294 - putative alpha-glucosidase (NCBI ptt file), at 4,219,281 to 4,221,233 BT3294 BT3295: BT3295 - hypothetical protein (NCBI ptt file), at 4,221,509 to 4,222,513 BT3295 BT3296: BT3296 - conserved hypothetical protein, putative outer membrane protein (NCBI ptt file), at 4,222,532 to 4,224,556 BT3296 BT3297: BT3297 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 4,224,567 to 4,227,647 BT3297
Group Condition BT3293 BT3294 BT3295 BT3296 BT3297
phage SJC12_cps8_0.1MOI -0.1 +0.1 -0.6 -0.1 -0.3
carbon source Mannan from Saccharomyces cerevisiae (C) +0.1 -0.2 -0.5 -0.4 +0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +0.1 +0.1 -0.5 -0.3 -0.2
phage HNL05_cps7_0.1MOI -0.0 +0.3 -0.3 -0.2 -0.2
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 +0.1 -0.7 +0.1 -0.1
carbon source Hyaluronic from Streptococcus equi -0.4 -0.3 +0.1 +0.0 +0.2
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM +0.2 +0.2 -0.5 -0.4 +0.3
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 +0.1 -0.4 -0.0 +0.3 -0.2
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM +0.2 -0.0 -0.4 -0.2 +0.3
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -0.1 -0.2 +0.4 +0.0 -0.3
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM +0.1 +0.2 +0.1 -0.5 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.1 +0.0 -0.6 +0.4 +0.1
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 -0.3 -0.1 +0.3 +0.4 -0.1
stress Varel_Bryant medium with Chlorpromazine 0.05 mM +0.1 +0.3 -0.3 -0.1 +0.2
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 -0.1 -0.1 +0.4 +0.4 -0.1
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 -0.0 -0.3 +0.4 +0.6 +0.0
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 +0.1 -0.1 +0.4 +0.4 -0.1
mouse_recovery_after_peg Post-colonization (Day 14) - Cage4;Mouse2 +0.0 +0.1 +0.5 +0.3 -0.2
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 +0.0 +0.1 +0.4 +0.5 -0.2
mouse_post_colonization Post-colonization (Day 14) - Cage4;Mouse4 +0.0 +0.2 +0.3 +0.5 -0.1
mouse_post_colonization Post-colonization (Day 12) - Cage6;Mouse1 +0.1 +0.1 +0.4 +0.4 -0.1
mouse_post_colonization Post-colonization (Day 8) - Cage1;Mouse5 +0.2 +0.5 +0.2 +0.1 +0.1
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 +0.1 +0.1 +0.6 +0.3 -0.0
mouse_post_colonization Post-colonization (Day 10) - Cage7;Mouse2 +0.2 +0.2 +0.4 +0.3 +0.0
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 -0.0 +0.1 +0.5 +0.6 -0.0
mouse_post_colonization Post-colonization (Day 14) - Cage5;Mouse1 +0.2 +0.2 +0.6 +0.3 -0.1
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse3 +0.3 +0.2 +0.4 +0.3 -0.1
stress BHIS with Dimetridazole 0.00625 mM +0.1 +0.3 +0.5 -0.0 +0.2
mouse_post_colonization Post-colonization (Day 8) - Cage7;Mouse1 +0.3 +0.3 +0.5 +0.2 -0.0
mouse_peg_treatment PEG (Day 3) - Cage1;Mouse2 +0.2 +0.6 +0.4 +0.1 +0.0
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