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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT3293 and BT3294 are separated by 102 nucleotides
BT3294 and BT3295 are separated by 275 nucleotides
BT3295 and BT3296 are separated by 18 nucleotides
BT3296 and BT3297 are separated by 10 nucleotides
BT3293: BT3293 - beta-galactosidase (NCBI ptt file), at 4,214,913 to 4,219,178
BT3293
BT3294: BT3294 - putative alpha-glucosidase (NCBI ptt file), at 4,219,281 to 4,221,233
BT3294
BT3295: BT3295 - hypothetical protein (NCBI ptt file), at 4,221,509 to 4,222,513
BT3295
BT3296: BT3296 - conserved hypothetical protein, putative outer membrane protein (NCBI ptt file), at 4,222,532 to 4,224,556
BT3296
BT3297: BT3297 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 4,224,567 to 4,227,647
BT3297
Group
Condition
BT3293
BT3294
BT3295
BT3296
BT3297
phage
SJC12_cps8_0.1MOI
-0.1
+0.1
-0.6
-0.1
-0.3
carbon source
Mannan from Saccharomyces cerevisiae (C)
+0.1
-0.2
-0.5
-0.4
+0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
+0.1
+0.1
-0.5
-0.3
-0.2
phage
HNL05_cps7_0.1MOI
-0.0
+0.3
-0.3
-0.2
-0.2
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
+0.1
+0.1
-0.7
+0.1
-0.1
carbon source
Hyaluronic from Streptococcus equi
-0.4
-0.3
+0.1
+0.0
+0.2
stress
Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM
+0.2
+0.2
-0.5
-0.4
+0.3
mouse_peg_treatment
PEG (Day 3) - Cage2;Mouse1
+0.1
-0.4
-0.0
+0.3
-0.2
stress
Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM
+0.2
-0.0
-0.4
-0.2
+0.3
mouse_peg_treatment
PEG (Day 3) - Cage3;Mouse2
-0.1
-0.2
+0.4
+0.0
-0.3
stress
Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM
+0.1
+0.2
+0.1
-0.5
+0.1
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
+0.1
+0.0
-0.6
+0.4
+0.1
mouse_post_colonization
Post-colonization (Day 14) - Cage3;Mouse1
-0.3
-0.1
+0.3
+0.4
-0.1
stress
Varel_Bryant medium with Chlorpromazine 0.05 mM
+0.1
+0.3
-0.3
-0.1
+0.2
mouse_peg_treatment
PEG (Day 1) - Cage3;Mouse1
-0.1
-0.1
+0.4
+0.4
-0.1
mouse_peg_treatment
PEG (Day 1) - Cage4;Mouse1
-0.0
-0.3
+0.4
+0.6
+0.0
mouse_post_colonization
Post-colonization (Day 12) - Cage7;Mouse3
+0.1
-0.1
+0.4
+0.4
-0.1
mouse_recovery_after_peg
Post-colonization (Day 14) - Cage4;Mouse2
+0.0
+0.1
+0.5
+0.3
-0.2
mouse_peg_treatment
PEG (Day 1 ) - Cage1;Mouse5
+0.0
+0.1
+0.4
+0.5
-0.2
mouse_post_colonization
Post-colonization (Day 14) - Cage4;Mouse4
+0.0
+0.2
+0.3
+0.5
-0.1
mouse_post_colonization
Post-colonization (Day 12) - Cage6;Mouse1
+0.1
+0.1
+0.4
+0.4
-0.1
mouse_post_colonization
Post-colonization (Day 8) - Cage1;Mouse5
+0.2
+0.5
+0.2
+0.1
+0.1
mouse_peg_treatment
PEG (Day 2) - Cage4;Mouse1
+0.1
+0.1
+0.6
+0.3
-0.0
mouse_post_colonization
Post-colonization (Day 10) - Cage7;Mouse2
+0.2
+0.2
+0.4
+0.3
+0.0
mouse_post_colonization
Post-colonization (Day 14) - Cage7;Mouse3
-0.0
+0.1
+0.5
+0.6
-0.0
mouse_post_colonization
Post-colonization (Day 14) - Cage5;Mouse1
+0.2
+0.2
+0.6
+0.3
-0.1
mouse_post_colonization
Post-colonization (Day 14) - Cage1;Mouse3
+0.3
+0.2
+0.4
+0.3
-0.1
stress
BHIS with Dimetridazole 0.00625 mM
+0.1
+0.3
+0.5
-0.0
+0.2
mouse_post_colonization
Post-colonization (Day 8) - Cage7;Mouse1
+0.3
+0.3
+0.5
+0.2
-0.0
mouse_peg_treatment
PEG (Day 3) - Cage1;Mouse2
+0.2
+0.6
+0.4
+0.1
+0.0
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