Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3283 and BT3284 are separated by 15 nucleotidesBT3284 and BT3285 are separated by 612 nucleotidesBT3285 and BT3286 are separated by 106 nucleotidesBT3286 and BT3287 are separated by 35 nucleotides BT3283: BT3283 - conserved hypothetical protein with conserved domain (NCBI ptt file), at 4,200,181 to 4,200,594 BT3283 BT3284: BT3284 - conserved hypothetical protein (NCBI ptt file), at 4,200,610 to 4,201,842 BT3284 BT3285: BT3285 - Holliday junction DNA helicase ruvB (NCBI ptt file), at 4,202,455 to 4,203,486 BT3285 BT3286: BT3286 - conserved hypothetical protein (NCBI ptt file), at 4,203,593 to 4,204,360 BT3286 BT3287: BT3287 - polysaccharide biosynthesis protein (NCBI ptt file), at 4,204,396 to 4,205,844 BT3287
Group Condition BT3283 BT3284 BT3285 BT3286 BT3287
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 N.D. -1.8 N.D. -1.3 N.D.
stress Varel_Bryant_medium_Glucose with Sulfamonomethoxine 0.2 mM N.D. -1.2 N.D. -0.9 N.D.
carbon source D-Ribose (C) N.D. -2.2 N.D. +0.2 N.D.
stress Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.2 mM N.D. -0.5 N.D. -1.5 N.D.
stress BHIS with Cephalothin 0.2 mM N.D. -1.1 N.D. -0.8 N.D.
stress Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.05 vol% N.D. -1.2 N.D. -0.7 N.D.
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml N.D. -0.9 N.D. -1.0 N.D.
carbon source Melibiose (C) N.D. -0.7 N.D. -1.2 N.D.
stress Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.1 mM N.D. -0.7 N.D. -1.2 N.D.
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml N.D. -1.3 N.D. -0.5 N.D.
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml N.D. +0.2 N.D. -1.7 N.D.
stress BHIS with Cephalothin 0.625 mg/ml N.D. -1.8 N.D. +0.3 N.D.
phage ARB14_cps1_0.1MOI N.D. -1.6 N.D. +0.2 N.D.
mouse_post_colonization Post-colonization (Day 1) - Cage2;Mouse2 N.D. -1.6 N.D. +0.2 N.D.
carbon source a-Cyclodextrin 2.5 mg/ml (C) N.D. +0.4 N.D. -1.6 N.D.
nitrogen source N-Acetyl-D-glucosamine (N) N.D. +0.4 N.D. -1.5 N.D.
phage SJC12_cps8_0.1MOI N.D. -1.8 N.D. +0.7 N.D.
stress Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM N.D. +0.7 N.D. -1.7 N.D.
stress BHIS with Cefoxitin 0.025 mM N.D. -1.4 N.D. +0.6 N.D.
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) N.D. +0.5 N.D. -1.3 N.D.
nitrogen source Glycine (N) N.D. +0.5 N.D. -1.3 N.D.
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM N.D. +0.6 N.D. -1.4 N.D.
stress BHIS with Dimetridazole 0.0125 mM N.D. +0.7 N.D. -1.3 N.D.
stress Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM N.D. +0.7 N.D. -1.3 N.D.
carbon source Mannan from Saccharomyces cerevisiae (C) N.D. +1.0 N.D. -1.2 N.D.
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) N.D. +1.4 N.D. -1.6 N.D.
stress BHIS with Dimethyl Sulfoxide 10 vol% N.D. -1.0 N.D. +0.9 N.D.
stress BHIS with Simvastatin 30 uM N.D. +0.9 N.D. -0.9 N.D.
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 N.D. +0.3 N.D. +1.8 N.D.
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 N.D. +0.8 N.D. +1.3 N.D.
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