Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3215 and BT3216 are separated by 7 nucleotidesBT3216 and BT3217 are separated by 30 nucleotidesBT3217 and BT3218 overlap by 4 nucleotidesBT3218 and BT3219 are separated by 207 nucleotides BT3215: BT3215 - conserved hypothetical protein (NCBI ptt file), at 4,107,646 to 4,107,981 BT3215 BT3216: BT3216 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine (NCBI ptt file), at 4,107,989 to 4,108,471 BT3216 BT3217: BT3217 - hypothetical protein (NCBI ptt file), at 4,108,502 to 4,108,693 BT3217 BT3218: BT3218 - hypothetical protein (NCBI ptt file), at 4,108,690 to 4,108,923 BT3218 BT3219: BT3219 - S-adenosylmethionine synthetase (NCBI ptt file), at 4,109,131 to 4,110,423 BT3219
Group Condition BT3215 BT3216 BT3217 BT3218 BT3219
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -0.6 N.D. -0.7 -0.9 N.D.
stress BHIS with Trimethoprim 0.0125 mM -1.1 N.D. -0.3 -0.7 N.D.
mouse Post-colonization (Day 4) - Cage1A;Mouse3 -0.6 N.D. -0.5 -0.8 N.D.
stress BHIS with Fusidic 0.004 mg/ml -0.1 N.D. -0.4 -1.3 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 -1.2 N.D. -0.5 -0.1 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage1;Mouse3 -0.8 N.D. -0.4 -0.6 N.D.
stress BHIS with Paraquat dichloride 0.1 mg/ml -1.0 N.D. -0.2 -0.5 N.D.
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 -0.9 N.D. -0.7 +0.2 N.D.
stress BHIS with Benzethonium chloride 0.002 mM -0.9 N.D. -0.6 +0.2 N.D.
carbon source D-Trehalose 20mM (C) +0.6 N.D. -0.7 -1.1 N.D.
stress BHIS with Fusidic 0.004 mg/ml +0.5 N.D. -0.8 -0.8 N.D.
mouse Post-dosage t1 (Day 1) - Cage1C;Mouse1 +0.4 N.D. -0.1 -1.4 N.D.
stress BHIS with Simvastatin 30 uM -0.9 N.D. -0.5 +0.4 N.D.
stress BHIS with Thioridazine 0.0125 mM +0.6 N.D. -1.0 -0.6 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 +0.5 N.D. -0.3 -1.2 N.D.
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C) +0.4 N.D. -0.5 -0.8 N.D.
nitrogen source L-aspartic (N) -1.3 N.D. +0.2 +0.3 N.D.
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM +0.5 N.D. -0.7 -0.6 N.D.
phage HNL05_cps7_0.1MOI +0.7 N.D. -1.1 -0.4 N.D.
stress BHIS with Thioridazine 0.025 mM +0.6 N.D. -0.5 -0.8 N.D.
carbon source (+)-Arabinogalactan; autoclaved 2.5 mg/ml (C) +0.4 N.D. +0.4 -1.4 N.D.
phage SJC12_cps8_0.1MOI +0.7 N.D. -0.5 -0.7 N.D.
survival aerobic shaking 48 hr copy B +0.6 N.D. -1.0 +0.2 N.D.
phage SJC12_cps8_0.1MOI +1.1 N.D. -0.2 -1.1 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.9 N.D. -0.6 -0.3 N.D.
phage ARB14_cps1_0.1MOI +1.0 N.D. -0.1 -0.6 N.D.
phage SJC15_cps8_1MOI +1.4 N.D. -0.2 -0.7 N.D.
stress BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM +0.7 N.D. -0.6 +0.4 N.D.
stress BHIS with Cephalothin 0.2 mM +1.6 N.D. -0.5 +0.1 N.D.
phage SJC16_cps8_1MOI +1.7 N.D. -0.3 -0.1 N.D.
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