Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT3210 and BT3211 are separated by 49 nucleotidesBT3211 and BT3212 are separated by 12 nucleotidesBT3212 and BT3213 are separated by 52 nucleotidesBT3213 and BT3214 are separated by 17 nucleotides BT3210: BT3210 - cell division protein FtsX (NCBI ptt file), at 4,103,807 to 4,104,688 BT3210 BT3211: BT3211 - conserved hypothetical protein (NCBI ptt file), at 4,104,738 to 4,104,971 BT3211 BT3212: BT3212 - putative bacitracin resistance protein (NCBI ptt file), at 4,104,984 to 4,105,778 BT3212 BT3213: BT3213 - tRNA pseudouridine synthase B (NCBI ptt file), at 4,105,831 to 4,106,553 BT3213 BT3214: BT3214 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file), at 4,106,571 to 4,107,629 BT3214
Group Condition BT3210 BT3211 BT3212 BT3213 BT3214
stress Varel_Bryant medium with Nitrofurantoin 0.15 mM -0.6 -4.3 N.D. -0.6 N.D.
stress BHIS with Oxytetracycline 0.000390625 mM -2.9 -2.4 N.D. -0.2 N.D.
stress BHIS with Zinc Pyrithione 0.0125 mM -0.4 -3.9 N.D. +0.1 N.D.
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -1.7 -0.6 N.D. -1.7 N.D.
stress BHIS with Anhydrotetracycline 0.0125 mM -1.8 -1.8 N.D. -0.3 N.D.
stress Thallium(I) acetate 0.025 mg/ml -0.3 -2.5 N.D. -1.0 N.D.
stress Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.0125 mM -1.2 -2.0 N.D. -0.7 N.D.
survival aerobic shaking 48 hr copy B -1.4 -1.2 N.D. -1.2 N.D.
stress Varel_Bryant_medium_Glucose with Benzethonium chloride 0.000390625 mM -0.5 -2.8 N.D. -0.3 N.D.
stress BHIS with Dimetridazole 0.025 mM -1.4 -1.6 N.D. -0.7 N.D.
stress BHIS with Chlorhexidine diacetate salt 0.00075 mM -1.5 -1.6 N.D. -0.4 N.D.
mouse_coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.2 -1.8 N.D. -1.6 N.D.
carbon source Mannan from Saccharomyces cerevisiae (C) +0.6 -3.2 N.D. -0.9 N.D.
mouse_coculture cage1; mouse2; day2; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 +0.1 -2.9 N.D. -0.5 N.D.
stress BHIS with Dimetridazole 0.0125 mM -1.2 -2.0 N.D. +0.3 N.D.
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM -0.1 -3.2 N.D. +0.6 N.D.
stress Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM +0.3 -3.3 N.D. +0.5 N.D.
stress BHIS with Lithocholic 0.4 mg/ml -1.9 +1.8 N.D. -1.4 N.D.
stress BHIS with Paraquat dichloride 0.1 mg/ml +0.9 -2.7 N.D. +0.8 N.D.
carbon source Heparin from porcine intestinal mucosa (C) +0.6 -2.4 N.D. +1.0 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.6 +2.2 N.D. -0.8 N.D.
stress BHIS with Paraquat dichloride 0.1 mg/ml +1.0 -2.3 N.D. +1.4 N.D.
mouse_recovery_after_peg Post-colonization (Day 14) - Cage4;Mouse2 -1.3 +0.6 N.D. +1.7 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 -0.4 +2.0 N.D. +1.3 N.D.
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 +0.2 +1.8 N.D. +1.6 N.D.
stress BHIS with Benzethonium chloride 0.002 mM +0.7 +1.9 N.D. +1.0 N.D.
stress BHIS with Trimethoprim 0.0125 mM +1.6 +0.5 N.D. +1.9 N.D.
stress BHIS with Trimethoprim 15 uM +1.3 +1.5 N.D. +1.2 N.D.
stress BHIS with DAMPA 60 uM +1.7 +1.2 N.D. +1.8 N.D.
stress BHIS with Trimethoprim 15 uM +1.9 +1.5 N.D. +2.0 N.D.
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