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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT3113 and BT3114 are separated by 253 nucleotides
BT3114 and BT3115 are separated by 445 nucleotides
BT3115 and BT3116 are separated by 777 nucleotides
BT3116 and BT3117 are separated by 11 nucleotides
BT3113: BT3113 - putative transmembrane efflux protein (NCBI ptt file), at 3,961,873 to 3,963,015
BT3113
BT3114: BT3114 - beta-galactosidase (NCBI ptt file), at 3,963,269 to 3,966,670
BT3114
BT3115: BT3115 - putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydraogenase (NCBI ptt file), at 3,967,116 to 3,970,436
BT3115
BT3116: BT3116 - GTP-binding protein (NCBI ptt file), at 3,971,214 to 3,972,317
BT3116
BT3117: BT3117 - putative oxidoreductase (NCBI ptt file), at 3,972,329 to 3,973,240
BT3117
Group
Condition
BT3113
BT3114
BT3115
BT3116
BT3117
stress
Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM
-0.2
+0.1
+0.0
N.D.
-2.4
stress
Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM
-0.1
-0.3
+0.2
N.D.
-1.8
stress
Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
-0.1
-0.2
-0.2
N.D.
-1.6
stress
BHIS with Vancomycin 0.016 mg/ml
-0.4
-0.1
-0.2
N.D.
-1.0
stress
Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.0125 mM
-0.2
-0.0
-0.1
N.D.
-1.4
carbon source
Heparin from porcine intestinal mucosa (C)
-0.5
-0.4
+0.1
N.D.
-0.7
mouse_peg_treatment
PEG (Day 1) - Cage3;Mouse4
-0.7
-0.1
+0.1
N.D.
-0.9
mouse_post_colonization
Post-colonization (Day 14) - Cage2;Mouse2
-0.4
-0.0
-0.1
N.D.
-1.0
stress
Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
-0.3
-0.3
-0.2
N.D.
-0.7
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
+0.0
+0.2
-0.0
N.D.
-1.7
carbon source
Heparin from porcine intestinal mucosa (C)
-0.4
-0.4
+0.1
N.D.
-0.7
stress
Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM
-0.2
-0.2
+0.1
N.D.
-1.0
stress
BHIS with Oxytetracycline 0.00078125 mM
-0.0
+0.1
-0.1
N.D.
-1.3
stress
Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
-0.2
-0.1
+0.2
N.D.
-1.2
stress
Varel_Bryant_medium_Glucose with Geneticin G418 0.2 mM
-0.3
+0.1
+0.0
N.D.
-1.2
carbon source
L-Arabinose (C)
-0.1
+0.1
-0.0
N.D.
-1.3
stress
Varel_Bryant medium with Dibucaine 0.2 mM
-0.2
+0.1
+0.1
N.D.
-1.1
phage
DAC23_cps8_10MOI
-0.4
-0.3
+0.2
N.D.
-0.6
stress
Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM
-0.4
+0.0
+0.2
N.D.
-1.0
stress
BHIS with Doxycycline hyclate 0.0001953125 mM
+0.3
-0.1
+0.0
N.D.
-1.3
stress
BHIS with Sulfamonomethoxine 0.1 mM
-0.3
-0.2
+0.2
N.D.
-0.9
stress
Varel_Bryant_medium_Glucose with Cephalothin 0.1 mM
-0.1
+0.2
+0.2
N.D.
-1.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.3
+0.2
-0.2
N.D.
-1.0
stress
BHIS with Simvastatin 30 uM
+0.5
-0.4
-0.4
N.D.
-0.3
stress
BHIS with 5-Fluorouracil 0.2 mM
-0.4
-0.3
+0.4
N.D.
+0.6
stress
BHIS with Chlorpromazine 0.1 mM
-0.5
-0.1
+0.1
N.D.
+1.0
phage
SJC12_cps8_0.1MOI
-0.4
-0.1
+0.0
N.D.
+1.0
phage
HNL05_cps7_0.1MOI
-0.2
-0.1
-0.2
N.D.
+1.2
phage
DAC16_cps7_0.1MOI
-0.3
-0.1
+0.1
N.D.
+1.2
phage
DAC19_cps8_0.1MOI
-0.1
-0.1
+0.2
N.D.
+1.1
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