Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2999 and BT3000 are separated by 173 nucleotidesBT3000 and BT3001 are separated by 116 nucleotidesBT3001 and BT3002 are separated by 219 nucleotidesBT3002 and BT3003 are separated by 104 nucleotides BT2999: BT2999 - helicase IV (NCBI ptt file), at 3,778,947 to 3,781,559 BT2999 BT3000: BT3000 - conserved hypothetical protein (NCBI ptt file), at 3,781,733 to 3,782,362 BT3000 BT3001: BT3001 - ATP-dependent DNA helicase (NCBI ptt file), at 3,782,479 to 3,784,062 BT3001 BT3002: BT3002 - hypothetical protein (NCBI ptt file), at 3,784,282 to 3,784,485 BT3002 BT3003: BT3003 - hypothetical protein (NCBI ptt file), at 3,784,590 to 3,786,869 BT3003
Group Condition BT2999 BT3000 BT3001 BT3002 BT3003
stress BHIS with Oxytetracycline 0.000390625 mM -0.0 -0.4 -2.6 -0.5 -0.1
stress BHIS with Anhydrotetracycline 0.0125 mM -0.0 +0.2 -2.0 -1.0 -0.1
stress BHIS with Doxycycline hyclate 0.000390625 mM +0.3 -0.5 -2.0 -0.8 +0.4
stress BHIS with Doxycycline hyclate 0.00009765625 mM -0.1 +0.2 -0.9 -0.7 -0.0
stress Varel_Bryant_medium_Glucose with Sulfamethizole 0.2 mM -0.2 +0.0 +0.0 -1.4 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 -0.0 -0.3 -1.0 +0.1
stress BHIS with Irgasan 0.025 mM -0.0 -0.6 +0.1 -0.9 +0.0
stress BHIS with Oxytetracycline 0.0001953125 mM +0.0 +0.1 -0.5 -1.0 +0.0
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM -0.0 +0.2 -0.5 -0.8 +0.0
stress Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM +0.1 +0.2 -0.3 -1.2 +0.2
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM -0.0 +0.1 -0.5 -0.8 +0.2
stress BHIS with Irgasan 0.0125 mM +0.3 +0.1 +0.2 -1.0 -0.1
stress BHIS with Dimethyl Sulfoxide 9 vol% -0.2 -0.4 -0.1 +0.8 -0.2
stress BHIS with Sulfamonomethoxine 0.2 mM +0.1 +0.7 -0.0 -0.9 +0.1
stress BHIS with Dimethyl Sulfoxide 10 vol% -0.2 -0.3 -0.1 +0.9 -0.1
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 -0.2 -0.4 +0.3 +0.5 -0.2
stress BHIS with Cephalothin 0.1 mM +0.1 +0.4 +0.3 -0.7 +0.1
stress BHIS with Ciprofloxacin Hydrochloride 0.025 mM +0.2 +0.4 +0.2 -0.6 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.2 +1.0 -0.4 -0.0 +0.3
stress BHIS with Trimethoprim 0.0125 mM +0.2 +0.8 +0.1 -0.7 +0.2
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 +0.2 -0.5 +0.4 +0.7 -0.1
stress BHIS with 5-Fluorouracil 0.1 mM +0.2 +0.7 +0.1 -0.6 +0.3
carbon source L-Rhamnose (C) -0.1 +0.8 +0.3 -0.3 +0.2
stress BHIS with Chlorpromazine 0.2 mM +0.2 +0.9 +0.2 -0.7 +0.3
stress BHIS with Trimethoprim 0.00625 mM +0.2 +0.9 +0.1 -0.5 +0.3
stress Bile salts 0.5 mg/ml +0.1 +0.2 +0.1 +0.8 +0.4
stress BHIS with Chlorpromazine 0.1 mM +0.3 +0.7 +0.5 +0.4 +0.1
stress BHIS with 5-Fluorouracil 0.1 mM +0.4 +0.9 +0.5 +0.3 +0.2
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM -0.1 +0.8 -0.1 +1.3 +0.4
stress BHIS with Doxycycline hyclate 0.0001953125 mM +0.5 +0.5 -0.1 +2.8 +1.6
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