Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2945 and BT2946 are separated by 105 nucleotidesBT2946 and BT2947 overlap by 8 nucleotidesBT2947 and BT2948 are separated by 57 nucleotidesBT2948 and BT2949 are separated by 11 nucleotides BT2945: BT2945 - UDP-N-acetyl-D-mannosamine dehydrogenase (NCBI ptt file), at 3,707,252 to 3,708,454 BT2945 BT2946: BT2946 - putative glycosyltransferase (NCBI ptt file), at 3,708,560 to 3,709,825 BT2946 BT2947: BT2947 - putative glycosyltransferase (NCBI ptt file), at 3,709,818 to 3,710,573 BT2947 BT2948: BT2948 - conserved hypothetical protein (NCBI ptt file), at 3,710,631 to 3,713,324 BT2948 BT2949: BT2949 - putative alpha-1,6-mannanase (NCBI ptt file), at 3,713,336 to 3,714,526 BT2949
Group Condition BT2945 BT2946 BT2947 BT2948 BT2949
carbon source D-Galacturonic Acid (C) -1.6 -4.7 N.D. +0.1 +0.0
carbon source D-Glucosamine Hydrochloride (C) -1.1 -4.7 N.D. -0.1 +0.1
carbon source L-Rhamnose (C) -0.5 -4.8 N.D. +0.0 -0.2
carbon source D-Glucose (C) -0.6 -4.8 N.D. -0.1 +0.0
carbon source D-Galacturonic Acid (C) -1.4 -3.8 N.D. +0.0 -0.2
carbon source D-Raffinose (C) -1.4 -3.6 N.D. +0.0 +0.1
carbon source D-Glucose (C) -0.4 -3.9 N.D. -0.2 -0.0
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 -2.7 -1.6 N.D. -0.1 +0.0
carbon source a-Cyclodextrin (C) -0.2 -4.1 N.D. -0.0 -0.0
carbon source Beta-Lactose (C) -0.1 -3.9 N.D. +0.0 +0.3
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 -3.3 +0.6 N.D. -0.2 -0.1
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse1 -3.5 +1.0 N.D. -0.1 +0.1
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 -3.4 +0.9 N.D. -0.2 +0.2
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 -2.8 +1.0 N.D. -0.1 -0.0
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse1 -2.9 +1.1 N.D. +0.0 -0.0
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse1 -2.6 +1.1 N.D. -0.0 -0.0
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 -3.1 +1.7 N.D. -0.0 +0.1
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse3 -2.4 +1.9 N.D. -0.0 -0.1
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 -2.2 +1.5 N.D. -0.0 -0.1
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 -2.0 +1.8 N.D. -0.1 -0.2
mouse_recovery_after_peg Post-colonization (Day 14) - Cage4;Mouse2 -2.2 +1.8 N.D. -0.0 +0.0
mouse_post_colonization Post-colonization (Day 10) - Cage7;Mouse2 -1.7 +2.0 N.D. -0.1 +0.2
nitrogen source L-Glutamine (N) +1.8 +1.7 N.D. +0.2 +0.1
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml +2.3 +1.7 N.D. +0.0 -0.0
stress Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml +2.8 +1.7 N.D. +0.0 +0.1
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml +2.4 +2.5 N.D. +0.0 -0.0
stress Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml +2.4 +2.8 N.D. +0.1 +0.1
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml +3.4 +3.3 N.D. -0.1 -0.3
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml +4.5 +4.7 N.D. +0.1 -0.3
nitrogen source L-aspartic (N) +4.6 +5.1 N.D. -0.1 +0.4
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