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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT2936 and BT2937 overlap by 4 nucleotides
BT2937 and BT2938 overlap by 4 nucleotides
BT2938 and BT2939 overlap by 29 nucleotides
BT2939 and BT2940 are separated by 223 nucleotides
BT2936: BT2936 - putative glycosyltransferase (NCBI ptt file), at 3,693,238 to 3,694,437
BT2936
BT2937: BT2937 - putative glycosyltransferase (NCBI ptt file), at 3,694,434 to 3,695,567
BT2937
BT2938: BT2938 - putative glycosyltransferase (NCBI ptt file), at 3,695,564 to 3,696,790
BT2938
BT2939: BT2939 - putative transcriptional regulator (NCBI ptt file), at 3,696,762 to 3,697,673
BT2939
BT2940: BT2940 - multidrug resistance protein (NCBI ptt file), at 3,697,897 to 3,699,000
BT2940
Group
Condition
BT2936
BT2937
BT2938
BT2939
BT2940
stress
BHIS with Chlorpromazine 0.2 mM
-1.4
-2.4
-2.7
-0.4
-0.3
stress
BHIS with Chlorpromazine 0.1 mM
-2.1
-1.4
-2.2
-0.3
-0.6
stress
BHIS with Thioridazine 0.0125 mM
-1.2
-1.1
-2.5
-0.6
-0.4
stress
BHIS with Thioridazine 0.025 mM
-1.3
-1.8
-2.0
-0.5
+0.0
mouse_peg_treatment
PEG (Day 3) - Cage3;Mouse2
-0.7
-3.1
-2.3
+0.1
+0.6
stress
BHIS with Thioridazine 0.0125 mM
-0.6
-0.5
-3.0
-0.4
-0.9
mouse_post_colonization
Post-colonization (Day 10) - Cage3;Mouse1
-0.2
-1.4
-3.2
-0.5
+0.0
stress
BHIS with Chlorpromazine 0.1 mM
-0.6
-1.0
-2.7
-0.5
-0.4
stress
BHIS with Benzethonium chloride 0.002 mM
-1.1
-0.8
-2.3
-0.1
-0.7
mouse_coculture
cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
-0.7
-1.0
-3.0
-0.3
-0.0
mouse_post_colonization
Post-colonization (Day 10) - Cage6;Mouse2
-0.7
-0.9
-2.7
-0.2
-0.3
mouse_post_colonization
Post-colonization (Day 8) - Cage6;Mouse2
-0.5
-1.2
-3.0
-0.1
+0.0
mouse_post_colonization
Post-colonization (Day 6) - Cage7;Mouse2
-0.5
-1.0
-2.8
-0.3
-0.0
mouse_post_colonization
Post-colonization (Day 10) - Cage1;Mouse1
-0.2
-1.1
-3.4
-0.2
+0.2
mouse_post_colonization
Post-colonization (Day 6) - Cage7;Mouse1
-0.3
-0.7
-3.3
-0.3
+0.0
mouse_post_colonization
Post-colonization (Day 10) - Cage4;Mouse1
-0.5
-1.0
-2.7
-0.4
+0.3
carbon source
D-Galacturonic Acid (C)
-1.0
-0.4
-3.1
+0.3
+0.0
mouse_post_colonization
Post-colonization (Day 14) - Cage1;Mouse1
-0.1
-1.2
-2.8
-0.5
+0.3
phage
HNL05_cps7_0.1MOI
-1.1
-1.8
-0.9
-0.7
+0.7
mouse_post_colonization
Post-colonization (Day 10) - Cage1;Mouse2
-0.2
-1.3
-2.3
-0.3
+0.6
carbon source
D-Glucose (C)
+0.8
+0.8
+2.0
+0.4
+0.5
nitrogen source
N-Acetyl-D-glucosamine (N)
+1.1
+1.3
+2.2
+0.2
+0.2
stress
Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM
+0.9
+2.2
+2.1
-0.1
+0.1
stress
Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
+1.6
+1.5
+2.9
-0.1
+0.3
stress
Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
+1.9
+1.4
+3.1
+0.3
+0.1
stress
Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
+1.8
+1.8
+3.3
+0.1
-0.1
stress
Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml
+1.9
+1.9
+2.8
+0.1
+0.3
stress
Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml
+2.1
+1.8
+4.1
-0.2
+0.2
nitrogen source
L-aspartic (N)
+2.9
+2.6
+4.3
+0.0
+0.5
stress
Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml
+3.3
+2.5
+5.3
+0.0
+0.3
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