Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2936 and BT2937 overlap by 4 nucleotidesBT2937 and BT2938 overlap by 4 nucleotidesBT2938 and BT2939 overlap by 29 nucleotidesBT2939 and BT2940 are separated by 223 nucleotides BT2936: BT2936 - putative glycosyltransferase (NCBI ptt file), at 3,693,238 to 3,694,437 BT2936 BT2937: BT2937 - putative glycosyltransferase (NCBI ptt file), at 3,694,434 to 3,695,567 BT2937 BT2938: BT2938 - putative glycosyltransferase (NCBI ptt file), at 3,695,564 to 3,696,790 BT2938 BT2939: BT2939 - putative transcriptional regulator (NCBI ptt file), at 3,696,762 to 3,697,673 BT2939 BT2940: BT2940 - multidrug resistance protein (NCBI ptt file), at 3,697,897 to 3,699,000 BT2940
Group Condition BT2936 BT2937 BT2938 BT2939 BT2940
stress BHIS with Chlorpromazine 0.2 mM -1.4 -2.4 -2.7 -0.4 -0.3
stress BHIS with Chlorpromazine 0.1 mM -2.1 -1.4 -2.2 -0.3 -0.6
stress BHIS with Thioridazine 0.0125 mM -1.2 -1.1 -2.5 -0.6 -0.4
stress BHIS with Thioridazine 0.025 mM -1.3 -1.8 -2.0 -0.5 +0.0
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -0.7 -3.1 -2.3 +0.1 +0.6
stress BHIS with Thioridazine 0.0125 mM -0.6 -0.5 -3.0 -0.4 -0.9
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse1 -0.2 -1.4 -3.2 -0.5 +0.0
stress BHIS with Chlorpromazine 0.1 mM -0.6 -1.0 -2.7 -0.5 -0.4
stress BHIS with Benzethonium chloride 0.002 mM -1.1 -0.8 -2.3 -0.1 -0.7
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.7 -1.0 -3.0 -0.3 -0.0
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 -0.7 -0.9 -2.7 -0.2 -0.3
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 -0.5 -1.2 -3.0 -0.1 +0.0
mouse_post_colonization Post-colonization (Day 6) - Cage7;Mouse2 -0.5 -1.0 -2.8 -0.3 -0.0
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse1 -0.2 -1.1 -3.4 -0.2 +0.2
mouse_post_colonization Post-colonization (Day 6) - Cage7;Mouse1 -0.3 -0.7 -3.3 -0.3 +0.0
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse1 -0.5 -1.0 -2.7 -0.4 +0.3
carbon source D-Galacturonic Acid (C) -1.0 -0.4 -3.1 +0.3 +0.0
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse1 -0.1 -1.2 -2.8 -0.5 +0.3
phage HNL05_cps7_0.1MOI -1.1 -1.8 -0.9 -0.7 +0.7
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 -0.2 -1.3 -2.3 -0.3 +0.6
carbon source D-Glucose (C) +0.8 +0.8 +2.0 +0.4 +0.5
nitrogen source N-Acetyl-D-glucosamine (N) +1.1 +1.3 +2.2 +0.2 +0.2
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM +0.9 +2.2 +2.1 -0.1 +0.1
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml +1.6 +1.5 +2.9 -0.1 +0.3
stress Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml +1.9 +1.4 +3.1 +0.3 +0.1
stress Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml +1.8 +1.8 +3.3 +0.1 -0.1
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml +1.9 +1.9 +2.8 +0.1 +0.3
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml +2.1 +1.8 +4.1 -0.2 +0.2
nitrogen source L-aspartic (N) +2.9 +2.6 +4.3 +0.0 +0.5
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml +3.3 +2.5 +5.3 +0.0 +0.3
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