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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT2915 and BT2916 are separated by 83 nucleotides
BT2916 and BT2917 are separated by 14 nucleotides
BT2917 and BT2918 are separated by 24 nucleotides
BT2918 and BT2919 are separated by 19 nucleotides
BT2915: BT2915 - putative secreted protein (NCBI ptt file), at 3,656,629 to 3,657,603
BT2915
BT2916: BT2916 - conserved hypothetical protein (NCBI ptt file), at 3,657,687 to 3,658,910
BT2916
BT2917: BT2917 - hypothetical protein (NCBI ptt file), at 3,658,925 to 3,659,599
BT2917
BT2918: BT2918 - hypothetical protein (NCBI ptt file), at 3,659,624 to 3,660,838
BT2918
BT2919: BT2919 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 3,660,858 to 3,662,780
BT2919
Group
Condition
BT2915
BT2916
BT2917
BT2918
BT2919
stress
BHIS with Lincomycin 0.0015625 mM
-0.4
-0.1
-0.2
-0.6
-0.3
stress
Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM
-0.5
-0.0
+0.0
-0.7
-0.2
stress
Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.05 mM
-0.2
-0.0
-0.5
-0.4
-0.3
stress
Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.0125 mM
-0.2
-0.2
-0.2
-0.6
-0.2
stress
Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM
-0.3
-0.1
-0.4
-0.3
-0.2
stress
Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM
+0.0
-0.3
+0.0
-0.7
-0.4
stress
Varel_Bryant_medium_Glucose with Irgasan 0.025 mM
-0.2
+0.0
-0.3
-0.5
-0.4
stress
BHIS with Dimethyl Sulfoxide 0.2 vol%
-0.1
-0.0
-0.2
-0.5
-0.5
stress
Varel_Bryant_medium_Glucose with Geneticin G418 0.2 mM
-0.2
+0.1
-0.3
-0.6
-0.4
stress
Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
-0.5
-0.0
+0.1
-0.5
-0.2
phage
SJC15_cps8_1MOI
-0.5
-0.7
-0.2
+0.1
+0.2
stress
BHIS with Rifampicin 0.000048828125 mM
+0.1
+0.1
-0.3
-0.7
-0.2
carbon source
Heparin from porcine intestinal mucosa (C)
-0.2
-0.2
-0.5
-0.2
+0.2
carbon source
D-Glucose 20mM (C)
+0.2
-0.6
+0.3
-0.1
-0.6
carbon source
Heparin from porcine intestinal mucosa (C)
-0.1
-0.1
-0.5
-0.2
+0.3
phage
DAC22_cps8_0.1MOI
+0.2
-0.4
+0.1
-0.4
-0.1
phage
SJC15_cps8_1MOI
-0.1
-0.7
+0.1
+0.2
+0.3
survival
aerobic shaking 48 hr copy A
-0.4
-0.1
+0.2
+0.4
-0.1
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.1
-0.1
+0.8
-0.3
-0.4
mouse_post_colonization
Post-colonization (Day 14) - Cage7;Mouse3
+0.3
-0.2
-0.4
+0.5
-0.1
stress
BHIS with Doxycycline hyclate 0.0001953125 mM
-0.4
-0.0
-0.1
+0.5
+0.2
mouse_peg_treatment
PEG (Day 1) - Cage4;Mouse1
+0.3
+0.0
-0.1
+0.6
-0.3
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.2
-0.0
+1.0
-0.0
-0.2
phage
HNL05_cps7_0.1MOI
+0.2
-0.5
+0.1
+0.3
+0.5
mouse_post_colonization
Post-colonization (Day 12) - Cage7;Mouse3
+0.5
+0.1
-0.0
+0.5
-0.3
mouse_peg_treatment
PEG (Day 1) - Cage3;Mouse1
+0.2
+0.1
-0.2
+0.8
-0.2
mouse_peg_treatment
PEG (Day 2) - Cage4;Mouse1
+0.5
-0.2
-0.3
+0.9
-0.0
mouse_peg_treatment
PEG (Day 3) - Cage1;Mouse2
+0.4
-0.1
-0.2
+0.5
+0.2
mouse_post_colonization
Post-colonization (Day 12) - Cage7;Mouse1
+0.6
+0.1
-0.2
+0.4
+0.1
mouse_peg_treatment
PEG (Day 3) - Cage2;Mouse1
+0.5
+0.1
+0.1
+0.6
+0.3
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