Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2840 and BT2841 are separated by 25 nucleotidesBT2841 and BT2842 are separated by 31 nucleotidesBT2842 and BT2843 are separated by 74 nucleotidesBT2843 and BT2844 are separated by 168 nucleotides BT2840: BT2840 - O-methyltransferase (NCBI ptt file), at 3,542,468 to 3,543,106 BT2840 BT2841: BT2841 - pyruvate kinase (NCBI ptt file), at 3,543,132 to 3,544,589 BT2841 BT2842: BT2842 - 3-dehydroquinate dehydratase (NCBI ptt file), at 3,544,621 to 3,545,043 BT2842 BT2843: BT2843 - integrase (NCBI ptt file), at 3,545,118 to 3,546,077 BT2843 BT2844: BT2844 - conserved hypothetical protein (NCBI ptt file), at 3,546,246 to 3,547,907 BT2844
Group Condition BT2840 BT2841 BT2842 BT2843 BT2844
mouse_coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.9 -4.0 N.D. -4.5 -0.3
mouse_coculture cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -1.0 -3.1 N.D. -4.8 -0.2
mouse_coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -1.0 -2.8 N.D. -4.7 -0.2
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -1.3 -3.1 N.D. -3.2 -0.9
mouse_coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.8 -2.5 N.D. -4.9 -0.1
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 -1.0 -3.6 N.D. -2.0 -1.2
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM -0.3 -4.4 N.D. -1.7 -1.2
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 -0.5 -3.9 N.D. -2.5 -0.5
mouse_coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -1.1 -2.7 N.D. -3.3 -0.4
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse2 -0.7 -3.9 N.D. -2.2 -0.5
mouse_coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -1.1 -1.6 N.D. -4.0 -0.6
mouse_coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.9 -2.0 N.D. -3.9 -0.4
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml -0.1 -0.2 N.D. -3.7 -3.2
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse1 -0.4 -3.0 N.D. -2.2 -1.2
mouse_post_colonization Post-colonization (Day 8) - Cage5;Mouse4 -0.4 -2.5 N.D. -3.5 -0.4
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 -0.9 -2.9 N.D. -1.8 -0.9
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 -0.6 -2.0 N.D. -2.2 -1.7
carbon source Heparin from porcine intestinal mucosa (C) -0.8 -2.2 N.D. -0.8 -2.7
mouse_post_colonization Post-colonization (Day 6) - Cage4;Mouse4 -0.5 -2.3 N.D. -3.7 +0.1
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse5 -0.8 -2.3 N.D. -3.1 -0.2
mouse Post-dosage t1 (Day 1) - Cage1C;Mouse1 -0.5 -1.7 N.D. -2.7 -1.4
mouse_peg_treatment PEG (Day 2) - Cage5;Mouse1 -1.0 -3.0 N.D. -1.2 -1.1
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml +0.2 +0.3 N.D. -3.2 -3.0
stress BHIS with Trimethoprim 0.00625 mM -0.7 -2.1 N.D. -3.2 +0.6
mouse_post_colonization Post-colonization (Day 3) - Cage6;Mouse1 -0.2 -2.7 N.D. -3.6 +1.1
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml +0.7 +2.2 N.D. -3.0 -3.2
nitrogen source L-aspartic (N) +0.5 +4.7 N.D. -2.0 -1.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.2 +3.7 N.D. -1.9 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.7 +4.3 N.D. -1.4 -0.1
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM +2.0 +3.5 N.D. -1.2 +0.7
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