Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2795 and BT2796 are separated by 277 nucleotidesBT2796 and BT2797 are separated by 118 nucleotidesBT2797 and BT2798 are separated by 179 nucleotidesBT2798 and BT2799 are separated by 44 nucleotides BT2795: BT2795 - bile salt tripartite efflux system, outer membrane component (from data), at 3,465,961 to 3,467,346 BT2795 BT2796: BT2796 - conserved hypothetical protein (NCBI ptt file), at 3,467,624 to 3,470,155 BT2796 BT2797: BT2797 - adenosylhomocysteinase (NCBI ptt file), at 3,470,274 to 3,471,704 BT2797 BT2798: BT2798 - carboxy-terminal processing protease precursor (NCBI ptt file), at 3,471,884 to 3,473,581 BT2798 BT2799: BT2799 - putative PfkB family carbohydrate kinase (NCBI ptt file), at 3,473,626 to 3,474,615 BT2799
Group Condition BT2795 BT2796 BT2797 BT2798 BT2799
stress Bile salts 0.5 mg/ml -3.2 N.D. -0.6 -1.1 -0.5
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 +0.0 N.D. -0.9 -3.7 -0.2
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse3 -0.1 N.D. -0.5 -4.2 +0.1
survival aerobic shaking 48 hr copy A +0.0 N.D. -0.7 -1.9 -1.9
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse1 -0.2 N.D. -0.5 -4.0 +0.1
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse3 +0.1 N.D. -0.9 -3.0 -0.6
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse1 -0.0 N.D. -0.7 -3.6 +0.0
mouse_post_colonization Post-colonization (Day 12) - Cage3;Mouse3 +0.1 N.D. -0.4 -3.6 -0.3
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 -0.1 N.D. -0.2 -4.1 +0.2
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 +0.1 N.D. -0.4 -4.0 +0.5
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 +0.3 N.D. -0.6 -4.1 +0.6
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse1 -0.1 N.D. -0.1 -3.9 +0.4
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -0.0 N.D. -0.9 -3.2 +0.4
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 -0.1 N.D. -0.1 -3.9 +0.4
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 -0.1 N.D. -0.2 -3.8 +0.5
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 -3.3 N.D. -0.2 -0.9 +0.9
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM -0.0 N.D. +0.2 -4.0 +0.5
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 -0.5 N.D. -0.3 -3.7 +1.3
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 +0.0 N.D. +0.3 -3.8 +0.2
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 -0.2 N.D. -0.4 -3.1 +0.6
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM +0.2 N.D. +0.3 -4.1 +0.4
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 -3.2 N.D. +0.2 -1.3 +1.2
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse4 -0.0 N.D. -0.3 -3.3 +0.6
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml -2.5 N.D. -0.2 -0.9 +0.9
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 -0.5 N.D. -0.3 -3.0 +1.1
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse3 -0.3 N.D. -0.7 -2.4 +0.8
mouse_peg_treatment PEG (Day 2) - Cage5;Mouse1 -0.4 N.D. -0.3 -2.8 +1.3
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 -0.1 N.D. -0.1 -3.1 +1.3
mouse Post-colonization (Day 7) - Cage1B;Mouse5 -0.3 N.D. -1.3 -1.6 +1.6
stress BHIS with Fusidic 0.004 mg/ml +0.3 N.D. +0.8 +2.4 +1.8
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