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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT2692 and BT2693 are separated by 97 nucleotides
BT2693 and BT2694 are separated by 28 nucleotides
BT2694 and BT2695 are separated by 120 nucleotides
BT2695 and BT2696 are separated by 51 nucleotides
BT2692: BT2692 - imidazolonepropionase (NCBI ptt file), at 3,354,584 to 3,355,837
BT2692
BT2693: BT2693 - formiminotransferase-cyclodeaminase (NCBI ptt file), at 3,355,935 to 3,356,837
BT2693
BT2694: BT2694 - putative urocanate hydratase (NCBI ptt file), at 3,356,866 to 3,358,857
BT2694
BT2695: BT2695 - hypothetical protein (NCBI ptt file), at 3,358,978 to 3,359,646
BT2695
BT2696: BT2696 - hypothetical protein (NCBI ptt file), at 3,359,698 to 3,359,892
BT2696
Group
Condition
BT2692
BT2693
BT2694
BT2695
BT2696
stress
BHIS with Fusidic 0.004 mg/ml
-1.9
-0.2
-0.7
-0.3
-0.7
stress
Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM
-1.1
-0.5
-0.6
-0.0
-0.6
stress
BHIS with Simvastatin 30 uM
-0.4
-0.1
+0.4
-1.3
-1.3
stress
BHIS with Cefoxitin 0.025 mM
-0.5
-1.1
-0.4
+0.3
-0.9
stress
Varel_Bryant_medium_Glucose with Irgasan 0.025 mM
-0.8
-0.4
-0.7
-0.1
-0.6
stress
BHIS with Zinc Pyrithione 0.0125 mM
-0.1
-0.7
-0.6
-0.2
-0.9
stress
BHIS with Simvastatin 30 uM
-0.5
+0.1
+0.1
-0.9
-1.3
stress
BHIS with Simvastatin 30 uM
-0.5
-0.1
+0.4
-1.2
-0.9
stress
Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM
-0.8
-0.4
-0.8
-0.3
-0.3
survival
aerobic shaking 48 hr copy B
-0.9
-1.0
-0.1
+0.4
-0.8
mouse_peg_treatment
PEG (Day 3) - Cage3;Mouse2
-0.2
-0.1
+0.3
-0.2
-2.1
stress
Varel_Bryant_medium_Glucose with Geneticin G418 0.2 mM
-0.4
-0.2
-0.9
-0.5
-0.5
survival
aerobic shaking 48 hr copy A
-1.0
-1.0
-0.3
+0.6
-0.8
stress
BHIS with Fusidic 0.004 mg/ml
-0.8
-0.4
-0.4
-0.4
-0.3
stress
BHIS with Ceftriaxone hemi(heptahydrate) 0.1 mM
-0.5
-0.3
-0.3
+0.3
-1.4
stress
BHIS with Oxytetracycline 0.000390625 mM
-0.8
-0.2
-0.3
+0.3
-1.1
stress
BHIS with DAMPA 60 uM
+0.0
+0.1
-0.4
-0.1
-1.6
stress
BHIS with Irgasan 0.0125 mM
-0.5
-0.7
-0.4
+0.4
-0.8
stress
BHIS with Chlorpromazine 0.1 mM
-0.1
-0.5
-0.5
+0.3
-1.0
stress
BHIS with Cefoxitin 0.0125 mM
-0.7
-0.3
-0.5
+0.3
-0.5
stress
BHIS with Chenodeoxycholic 0.25 mg/ml
-0.6
+0.0
+0.0
+0.4
-1.5
mouse
Post-colonization (Day 7) - Cage1B;Mouse5
+0.3
+0.2
-0.6
+0.4
-1.4
mouse
Post-colonization (Day 7) - Cage1A;Mouse1
+0.0
+0.2
-0.3
+0.5
-1.4
nitrogen source
Glucuronamide (N)
-0.4
-0.1
-0.0
-0.9
+1.0
phage
SJC16_cps8_10MOI
-0.6
-1.3
+0.7
-0.1
+1.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
+0.2
-0.8
+0.5
-0.4
+0.3
phage
HNL05_cps7_1MOI
-0.3
-1.3
+0.2
+0.1
+1.4
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-1.0
-0.0
+0.1
+0.3
+0.9
phage
SJC16_cps8_1MOI
-0.7
-0.4
+0.3
+0.5
+0.7
carbon source
Mannan from Saccharomyces cerevisiae (C)
+0.2
+0.2
+0.1
-0.8
+0.9
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