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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT2619 and BT2620 are separated by 681 nucleotides
BT2620 and BT2621 are separated by 25 nucleotides
BT2621 and BT2622 are separated by 8 nucleotides
BT2622 and BT2623 are separated by 96 nucleotides
BT2619: BT2619 - two-component system sensor histidine kinase (NCBI ptt file), at 3,259,854 to 3,262,226
BT2619
BT2620: BT2620 - alpha-glucosidase (NCBI ptt file), at 3,262,908 to 3,264,857
BT2620
BT2621: BT2621 - hypothetical protein (NCBI ptt file), at 3,264,883 to 3,266,193
BT2621
BT2622: BT2622 - alpha-glucuronidase (NCBI ptt file), at 3,266,202 to 3,268,370
BT2622
BT2623: BT2623 - putative alpha-1,6-mannanase (NCBI ptt file), at 3,268,467 to 3,270,020
BT2623
Group
Condition
BT2619
BT2620
BT2621
BT2622
BT2623
stress
BHIS with Doxycycline hyclate 0.0001953125 mM
-0.1
-1.0
-0.2
-0.3
-0.2
stress
BHIS with Doxycycline hyclate 0.000390625 mM
-0.6
-0.5
+0.1
-0.3
-0.3
stress
Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM
-0.2
-0.9
-0.2
-0.0
-0.1
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen
-0.3
-0.0
-0.5
-0.2
-0.5
stress
BHIS with Cephalothin 0.1 mM
-0.7
-0.3
-0.2
-0.2
-0.0
stress
BHIS with Doxycycline hyclate 0.00009765625 mM
-0.0
-0.6
-0.4
-0.3
-0.1
stress
Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM
-0.3
-0.6
-0.1
-0.2
-0.0
stress
BHIS with Chenodeoxycholic 0.25 mg/ml
-0.3
-0.1
-0.2
-0.6
-0.1
stress
Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM
-0.1
-0.2
+0.1
-0.2
-0.7
stress
BHIS with Oxytetracycline 0.000390625 mM
-0.2
-0.5
-0.1
-0.2
-0.0
stress
Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM
-0.5
-0.6
+0.2
-0.2
+0.0
carbon source
Heparin from porcine intestinal mucosa (C)
-0.3
-0.3
-0.4
+0.2
-0.2
phage
SJC12_cps8_0.1MOI
-0.4
-0.5
+0.1
+0.1
-0.1
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
+0.3
-0.3
-0.0
-0.3
-0.2
stress
Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM
-0.5
-0.3
+0.2
-0.1
+0.3
stress
BHIS with Chlorpromazine 0.1 mM
-0.5
-0.1
+0.4
-0.2
+0.1
mouse_post_colonization
Post-colonization (Day 10) - Cage3;Mouse1
-0.4
-0.3
+0.2
+0.0
+0.2
stress
BHIS with Thioridazine 0.025 mM
-0.3
-0.1
+0.4
-0.3
+0.2
stress
BHIS with 5-Fluorouracil 0.1 mM
-0.5
-0.0
+0.4
+0.2
+0.4
stress
BHIS with Simvastatin 30 uM
+0.4
-0.1
+0.4
-0.1
+0.2
mouse_post_colonization
Post-colonization (Day 12) - Cage7;Mouse1
+0.2
-0.2
+0.4
+0.2
+0.2
mouse
Post-colonization (Day 7) - Cage1B;Mouse5
+0.3
+0.1
-0.1
+0.2
+0.4
mouse_peg_treatment
PEG (Day 2) - Cage5;Mouse1
-0.0
-0.1
+0.4
+0.3
+0.3
mouse_peg_treatment
PEG (Day 2) - Cage4;Mouse1
-0.1
-0.0
+0.5
+0.1
+0.6
carbon source
Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
+0.2
+0.1
+0.0
+0.4
+0.3
mouse_peg_treatment
PEG (Day 3) - Cage2;Mouse1
+0.2
+0.0
+0.5
-0.0
+0.5
stress
BHIS with Benzethonium chloride 0.002 mM
+0.2
-0.0
+0.3
+0.4
+0.3
carbon source
Mannan from Saccharomyces cerevisiae (C)
+0.4
+0.1
+0.2
+0.3
+0.3
carbon source
Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
+0.3
+0.2
+0.1
+0.4
+0.4
stress
BHIS with Doxycycline hyclate 0.0001953125 mM
-0.1
+0.2
+0.5
+0.7
+0.5
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