Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2611 and BT2612 are separated by 2 nucleotidesBT2612 and BT2613 are separated by 86 nucleotidesBT2613 and BT2614 are separated by 38 nucleotidesBT2614 and BT2615 are separated by 163 nucleotides BT2611: BT2611 - hypothetical protein (NCBI ptt file), at 3,250,691 to 3,250,915 BT2611 BT2612: BT2612 - hypothetical protein (NCBI ptt file), at 3,250,918 to 3,251,340 BT2612 BT2613: BT2613 - putative mobilization protein (NCBI ptt file), at 3,251,427 to 3,252,581 BT2613 BT2614: BT2614 - putative mobilization protein (NCBI ptt file), at 3,252,620 to 3,254,665 BT2614 BT2615: BT2615 - reverse transcriptase (NCBI ptt file), at 3,254,829 to 3,256,121 BT2615
Group Condition BT2611 BT2612 BT2613 BT2614 BT2615
stress BHIS with Dimethyl Sulfoxide 10 vol% N.D. -2.5 -0.3 +0.3 -0.1
stress BHIS with Lithocholic 0.4 mg/ml N.D. -1.7 -0.0 +0.1 -0.1
stress BHIS with Dimethyl Sulfoxide 9 vol% N.D. -1.2 -0.7 +0.2 -0.0
stress BHIS with Dimethyl Sulfoxide 9 vol% N.D. -1.3 -0.4 +0.4 -0.3
stress BHIS with Spiramycin 0.2 mM N.D. -0.9 -0.4 -0.1 -0.1
stress BHIS with Chenodeoxycholic 0.25 mg/ml N.D. -1.6 +0.2 +0.0 -0.1
stress BHIS with Cefoxitin 0.025 mM N.D. -1.0 -0.3 -0.4 +0.3
carbon source Maltitol 20mM (C) N.D. -1.5 +0.1 +0.1 -0.1
stress BHIS with Deoxycholic 0.2 mg/ml N.D. -1.5 +0.3 -0.1 -0.1
carbon source Beta-Lactose (C) N.D. -1.7 +0.4 +0.2 -0.1
carbon source D-Trehalose (C) N.D. -0.7 -0.3 +0.2 -0.3
stress BHIS with Chloride 350 mM N.D. -0.7 -0.7 +0.5 -0.0
survival aerobic shaking 48 hr copy B N.D. -1.2 +0.4 +0.0 +0.1
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM N.D. -0.8 +0.3 -0.4 +0.2
carbon source Hyaluronic from Streptococcus equi N.D. -1.0 -0.1 +0.4 +0.3
carbon source Mannan from Saccharomyces cerevisiae (C) N.D. +0.8 -1.2 +0.1 -0.1
phage HNL05_cps7_0.1MOI N.D. -0.8 +0.3 -0.2 +0.6
stress BHIS with 5-Fluorouracil 0.1 mM N.D. +0.7 +0.3 -0.6 -0.0
survival aerobic shaking 48 hr copy A N.D. -1.1 +1.1 +0.1 +0.5
stress BHIS with Thioridazine 0.0125 mM N.D. +0.8 +0.1 -0.6 +0.5
phage SJC16_cps8_10MOI N.D. +0.8 -0.1 -0.4 +0.6
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. +1.0 -0.2 +0.3 -0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +1.9 -0.6 +0.0 -0.2
mouse_coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. +1.1 +0.2 -0.3 +0.2
control NoPhage N.D. +0.9 +0.2 -0.2 +0.3
phage SJC12_cps8_0.1MOI N.D. +0.5 +0.3 -0.2 +0.6
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 N.D. +0.7 +0.4 -0.2 +0.4
stress BHIS with Trimethoprim 0.00625 mM N.D. +0.9 +0.3 -0.2 +0.4
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 N.D. +0.6 +0.7 -0.1 +0.2
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 N.D. +0.8 +0.4 +0.0 +0.5
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