Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2409 and BT2410 are separated by 421 nucleotidesBT2410 and BT2411 are separated by 40 nucleotidesBT2411 and BT2412 overlap by 4 nucleotidesBT2412 and BT2413 overlap by 4 nucleotides BT2409: BT2409 - putative TonB-dependent outer membrane protein (NCBI ptt file), at 3,008,002 to 3,010,401 BT2409 BT2410: BT2410 - putative acetyltransferase (NCBI ptt file), at 3,010,823 to 3,011,314 BT2410 BT2411: BT2411 - hypothetical protein (NCBI ptt file), at 3,011,355 to 3,012,389 BT2411 BT2412: BT2412 - putative collagenase (NCBI ptt file), at 3,012,386 to 3,014,215 BT2412 BT2413: BT2413 - homoserine O-succinyltransferase (NCBI ptt file), at 3,014,212 to 3,015,129 BT2413
Group Condition BT2409 BT2410 BT2411 BT2412 BT2413
mouse_post_colonization Post-colonization (Day 6) - Cage5;Mouse4 N.D. -0.5 +0.0 -0.1 -3.3
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse1 N.D. -0.8 -0.1 +0.1 -2.7
mouse_post_colonization Post-colonization (Day 6) - Cage1;Mouse4 N.D. +0.1 -0.0 +0.0 -3.6
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 N.D. -0.5 +0.3 +0.1 -3.1
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse3 N.D. -0.5 +0.4 -0.1 -2.8
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.6 +0.3 -0.2 -2.6
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse1 N.D. +0.1 +0.3 +0.0 -3.3
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 N.D. -0.5 +0.3 +0.2 -2.8
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse1 N.D. +0.3 +0.0 +0.2 -3.4
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse1 N.D. -0.5 +0.2 +0.2 -2.7
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 N.D. -0.4 +0.5 +0.4 -3.1
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse2 N.D. -0.0 +0.3 +0.6 -3.3
mouse_post_colonization Post-colonization (Day 6) - Cage2;Mouse3 N.D. +0.4 +0.1 +0.4 -2.9
mouse_post_colonization Post-colonization (Day 8) - Cage2;Mouse3 N.D. +0.7 +0.2 +0.3 -3.0
mouse_post_colonization Post-colonization (Day 10) - Cage2;Mouse1 N.D. +0.7 +0.1 +0.3 -2.9
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 N.D. +0.8 +0.4 -0.4 -2.4
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.5 +1.0 +0.2 -2.2
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 N.D. +0.4 +0.9 +0.5 -3.0
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. -0.5 +1.4 +0.3 -2.3
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 N.D. +0.4 +1.0 +0.5 -2.7
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM N.D. +0.5 -1.1 -0.6 +2.4
stress BHIS with Dimethyl Sulfoxide 10 vol% N.D. -0.8 +1.1 +0.9 +0.7
nitrogen source L-Valine (N) N.D. -0.2 +1.6 +0.9 +0.9
stress Varel_Bryant medium with Thioridazine 0.0125 mM N.D. +0.2 +0.1 -0.0 +3.5
nitrogen source L-aspartic (N) N.D. -0.0 +2.4 +0.9 +0.6
stress BHIS with Chlorpromazine 0.2 mM N.D. +1.3 +1.1 +0.7 +0.9
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml N.D. -0.0 +0.7 +0.6 +2.8
stress BHIS with Chlorpromazine 0.1 mM N.D. +0.7 +1.1 +0.9 +1.5
stress Varel_Bryant medium with Chlorpromazine 0.05 mM N.D. -0.3 -0.0 +0.4 +5.0
stress BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM N.D. +0.8 +2.1 +1.7 +1.6
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