Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2322 and BT2323 are separated by 697 nucleotidesBT2323 and BT2324 are separated by 26 nucleotidesBT2324 and BT2325 are separated by 38 nucleotidesBT2325 and BT2326 overlap by 11 nucleotides BT2322: BT2322 - putative integrase (NCBI ptt file), at 2,897,656 to 2,898,654 BT2322 BT2323: BT2323 - conserved hypothetical protein (NCBI ptt file), at 2,899,352 to 2,900,680 BT2323 BT2324: BT2324 - DNA topoisomerase III (NCBI ptt file), at 2,900,707 to 2,902,806 BT2324 BT2325: BT2325 - hypothetical protein (NCBI ptt file), at 2,902,845 to 2,903,312 BT2325 BT2326: BT2326 - putative DNA methylase (NCBI ptt file), at 2,903,302 to 2,909,028 BT2326
Group Condition BT2322 BT2323 BT2324 BT2325 BT2326
phage SJC16_cps8_1MOI -0.8 -0.7 -0.1 -1.7 -0.3
phage DAC16_cps7_0.1MOI -0.6 -2.2 -0.1 -0.6 +0.1
phage SJC12_cps8_0.1MOI -0.4 -1.1 +0.1 -1.4 -0.1
phage HNL05_cps7_0.1MOI -0.4 -1.7 -0.6 -0.2 +0.1
phage DAC19_cps8_0.1MOI -0.5 -1.7 -0.1 -0.6 +0.1
stress BHIS with Chlorpromazine 0.2 mM -0.6 -1.2 -0.1 -0.9 +0.1
phage SJC12_cps8_0.1MOI -0.4 -1.6 -0.1 -0.5 -0.1
stress BHIS with Ceftriaxone hemi(heptahydrate) 0.2 mM -0.3 -1.1 -0.3 -0.4 -0.3
stress BHIS with Trimethoprim 0.00625 mM -0.7 -1.1 +0.0 -0.7 +0.0
survival aerobic shaking 48 hr copy B -0.3 -0.8 -0.8 -0.3 -0.2
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.8 -1.0 -0.3 -0.4 +0.1
phage DAC15 _cps3_0.1MOI -0.6 -1.3 -0.2 -0.4 +0.2
phage DAC20_cps8_1MOI -0.6 -1.1 -0.2 -0.4 -0.0
stress BHIS with Thioridazine 0.0125 mM -0.5 -0.2 -0.2 -1.3 -0.1
stress BHIS with Ceftazidime 0.5 mg/ml -0.1 -1.8 +0.3 -0.5 -0.0
stress BHIS with Trimethoprim 0.0125 mM -0.6 -1.2 +0.0 -0.6 +0.1
mouse_coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.9 -0.8 +0.1 -0.4 +0.0
control NoPhage -0.4 -0.9 +0.3 -0.9 -0.1
carbon source D-Xylose (C) -0.1 -0.9 +0.2 -1.2 -0.0
control NoPhage -0.4 -1.0 +0.2 -0.4 -0.2
phage SJC16_cps8_10MOI -0.4 -1.3 +0.3 -1.1 +0.6
stress BHIS with 5-Fluorouracil 0.2 mM -0.6 -1.0 +0.0 -0.5 +0.3
phage DAC22_cps8_0.1MOI -0.3 -1.2 +0.1 -0.5 +0.2
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse4 -0.1 -1.5 -0.3 +0.3 -0.1
stress BHIS with Cefoxitin 0.025 mM -0.5 +0.6 -0.5 -0.8 -0.3
carbon source Heparin from porcine intestinal mucosa (C) -0.4 +0.8 +0.3 -0.8 -0.1
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -0.2 +0.9 -0.5 +0.5 -0.3
carbon source Mannan from Saccharomyces cerevisiae (C) +0.5 +0.8 +0.2 +0.6 -0.3
carbon source Mannan from Saccharomyces cerevisiae (C) +0.4 +0.8 +0.5 +1.0 +0.0
stress BHIS with Chloride 350 mM +0.7 +1.2 +0.1 +0.6 +0.2
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