Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2179 and BT2180 are separated by 126 nucleotidesBT2180 and BT2181 are separated by 40 nucleotidesBT2181 and BT2182 are separated by 111 nucleotidesBT2182 and BT2183 are separated by 404 nucleotides BT2179: BT2179 - putative DNA mismatch repair protein (NCBI ptt file), at 2,737,773 to 2,738,837 BT2179 BT2180: BT2180 - conserved hypothetical protein (NCBI ptt file), at 2,738,964 to 2,739,659 BT2180 BT2181: BT2181 - transcriptional regulator (NCBI ptt file), at 2,739,700 to 2,740,473 BT2181 BT2182: BT2182 - conserved hypothetical protein (NCBI ptt file), at 2,740,585 to 2,741,226 BT2182 BT2183: BT2183 - conserved hypothetical protein (NCBI ptt file), at 2,741,631 to 2,742,686 BT2183
Group Condition BT2179 BT2180 BT2181 BT2182 BT2183
stress BHIS with Dimetridazole 0.025 mM +1.0 +0.2 -0.4 -0.7 -3.4
stress BHIS with Dimetridazole 0.025 mM +0.7 -0.7 +0.2 -0.3 -3.0
stress BHIS with Dimetridazole 0.0125 mM +0.3 -0.7 -0.4 -0.1 -2.2
stress BHIS with Dimetridazole 0.025 mM +0.6 -0.3 +0.3 -0.3 -2.8
mouse_post_colonization Post-colonization (Day 1) - Cage2;Mouse2 -0.4 -0.6 -1.0 -0.4 +0.0
stress BHIS with Dimetridazole 0.00625 mM +0.1 +0.3 -0.0 -0.4 -2.0
stress Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM +0.5 -0.4 -0.7 +0.2 -1.5
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 -0.6 -0.4 +0.1 -1.3 +0.3
stress BHIS with Dimetridazole 0.0125 mM +0.4 +0.1 -0.0 -0.3 -1.9
stress BHIS with Fusidic 0.002 mg/ml -0.7 +0.7 -0.5 -1.3 +0.1
stress BHIS with Doxycycline hyclate 0.0001953125 mM -0.6 +0.4 -1.1 -0.1 -0.2
stress Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM +0.1 +0.3 +0.3 -0.2 -1.8
stress BHIS with Dimetridazole 0.00625 mM +0.1 +0.5 +0.3 +0.2 -2.2
mouse_post_colonization Post-colonization (Day 12) - Cage1;Mouse3 -0.2 -0.2 +0.4 -1.3 +0.3
stress BHIS with 5-Fluorouracil 0.1 mM +0.1 -0.8 +0.6 -0.3 -0.6
stress BHIS with Thioridazine 0.0125 mM +0.4 -1.5 +0.4 +0.2 -0.5
stress Varel_Bryant_medium_Glucose with Sulfamonomethoxine 0.2 mM -0.7 +0.7 -0.5 -0.2 -0.2
control NoPhage +0.2 -1.0 +0.6 -0.8 +0.1
stress BHIS with Trimethoprim 0.0125 mM +0.7 -0.9 +0.3 -0.3 -0.4
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 +0.6 -0.5 +0.3 -0.4 -0.6
stress Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6 +0.3 -1.1 +0.7 -0.4 +0.1
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 -0.6 +0.3 -0.4 -0.3 +0.8
mouse_coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 +0.2 -0.6 +0.9 -0.4 -0.1
carbon source Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C) -0.2 +0.6 -0.6 +0.6 -0.3
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM -1.0 +0.1 +0.8 +0.6 -0.2
nitrogen source L-aspartic (N) -0.0 +1.1 -0.8 +0.8 -0.4
stress BHIS with 5-Fluorouracil 0.1 mM +0.9 -0.6 +0.6 -0.1 +0.1
stress BHIS with Ceftazidime 0.5 mg/ml +0.2 +0.9 +0.8 -0.7 -0.1
carbon source Mannan from Saccharomyces cerevisiae (C) -0.2 +0.3 +0.7 +0.9 -0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.3 +0.6 +0.3 +1.1 +0.1
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