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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT2179 and BT2180 are separated by 126 nucleotides
BT2180 and BT2181 are separated by 40 nucleotides
BT2181 and BT2182 are separated by 111 nucleotides
BT2182 and BT2183 are separated by 404 nucleotides
BT2179: BT2179 - putative DNA mismatch repair protein (NCBI ptt file), at 2,737,773 to 2,738,837
BT2179
BT2180: BT2180 - conserved hypothetical protein (NCBI ptt file), at 2,738,964 to 2,739,659
BT2180
BT2181: BT2181 - transcriptional regulator (NCBI ptt file), at 2,739,700 to 2,740,473
BT2181
BT2182: BT2182 - conserved hypothetical protein (NCBI ptt file), at 2,740,585 to 2,741,226
BT2182
BT2183: BT2183 - conserved hypothetical protein (NCBI ptt file), at 2,741,631 to 2,742,686
BT2183
Group
Condition
BT2179
BT2180
BT2181
BT2182
BT2183
stress
BHIS with Dimetridazole 0.025 mM
+1.0
+0.2
-0.4
-0.7
-3.4
stress
BHIS with Dimetridazole 0.025 mM
+0.7
-0.7
+0.2
-0.3
-3.0
stress
BHIS with Dimetridazole 0.0125 mM
+0.3
-0.7
-0.4
-0.1
-2.2
stress
BHIS with Dimetridazole 0.025 mM
+0.6
-0.3
+0.3
-0.3
-2.8
mouse_post_colonization
Post-colonization (Day 1) - Cage2;Mouse2
-0.4
-0.6
-1.0
-0.4
+0.0
stress
BHIS with Dimetridazole 0.00625 mM
+0.1
+0.3
-0.0
-0.4
-2.0
stress
Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
+0.5
-0.4
-0.7
+0.2
-1.5
mouse_post_colonization
Post-colonization (Day 6) - Cage6;Mouse2
-0.6
-0.4
+0.1
-1.3
+0.3
stress
BHIS with Dimetridazole 0.0125 mM
+0.4
+0.1
-0.0
-0.3
-1.9
stress
BHIS with Fusidic 0.002 mg/ml
-0.7
+0.7
-0.5
-1.3
+0.1
stress
BHIS with Doxycycline hyclate 0.0001953125 mM
-0.6
+0.4
-1.1
-0.1
-0.2
stress
Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
+0.1
+0.3
+0.3
-0.2
-1.8
stress
BHIS with Dimetridazole 0.00625 mM
+0.1
+0.5
+0.3
+0.2
-2.2
mouse_post_colonization
Post-colonization (Day 12) - Cage1;Mouse3
-0.2
-0.2
+0.4
-1.3
+0.3
stress
BHIS with 5-Fluorouracil 0.1 mM
+0.1
-0.8
+0.6
-0.3
-0.6
stress
BHIS with Thioridazine 0.0125 mM
+0.4
-1.5
+0.4
+0.2
-0.5
stress
Varel_Bryant_medium_Glucose with Sulfamonomethoxine 0.2 mM
-0.7
+0.7
-0.5
-0.2
-0.2
control
NoPhage
+0.2
-1.0
+0.6
-0.8
+0.1
stress
BHIS with Trimethoprim 0.0125 mM
+0.7
-0.9
+0.3
-0.3
-0.4
mouse_coculture
cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
+0.6
-0.5
+0.3
-0.4
-0.6
stress
Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6
+0.3
-1.1
+0.7
-0.4
+0.1
mouse_post_colonization
Post-colonization (Day 1) - Cage6;Mouse1
-0.6
+0.3
-0.4
-0.3
+0.8
mouse_coculture
cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
+0.2
-0.6
+0.9
-0.4
-0.1
carbon source
Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)
-0.2
+0.6
-0.6
+0.6
-0.3
stress
Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM
-1.0
+0.1
+0.8
+0.6
-0.2
nitrogen source
L-aspartic (N)
-0.0
+1.1
-0.8
+0.8
-0.4
stress
BHIS with 5-Fluorouracil 0.1 mM
+0.9
-0.6
+0.6
-0.1
+0.1
stress
BHIS with Ceftazidime 0.5 mg/ml
+0.2
+0.9
+0.8
-0.7
-0.1
carbon source
Mannan from Saccharomyces cerevisiae (C)
-0.2
+0.3
+0.7
+0.9
-0.3
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.3
+0.6
+0.3
+1.1
+0.1
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