Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2133 and BT2134 are separated by 90 nucleotidesBT2134 and BT2135 are separated by 75 nucleotidesBT2135 and BT2136 overlap by 12 nucleotidesBT2136 and BT2137 are separated by 744 nucleotides BT2133: BT2133 - conserved hypothetical protein (NCBI ptt file), at 2,684,368 to 2,687,076 BT2133 BT2134: BT2134 - putative HD superfamily hydrolase (NCBI ptt file), at 2,687,167 to 2,687,703 BT2134 BT2135: BT2135 - conserved hypothetical protein (NCBI ptt file), at 2,687,779 to 2,688,942 BT2135 BT2136: BT2136 - putative purple acid phosphatase (NCBI ptt file), at 2,688,931 to 2,690,289 BT2136 BT2137: BT2137 - transposase (NCBI ptt file), at 2,691,034 to 2,691,753 BT2137
Group Condition BT2133 BT2134 BT2135 BT2136 BT2137
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 N.D. -0.8 -0.2 -2.5 N.D.
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 N.D. -0.8 -0.0 -2.6 N.D.
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 N.D. -1.0 -0.6 -1.7 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 N.D. -0.4 -0.6 -2.2 N.D.
mouse_recovery_after_peg Post-colonization (Day 14) - Cage4;Mouse2 N.D. -0.9 -0.5 -1.6 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 N.D. -1.0 -0.2 -1.8 N.D.
phage DAC22_cps8_0.1MOI N.D. -1.1 -0.5 -1.2 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage3;Mouse1 N.D. -0.1 -0.5 -2.3 N.D.
phage DAC16_cps7_0.1MOI N.D. -0.7 -0.3 -1.8 N.D.
phage DAC16_cps7_0.1MOI N.D. -0.8 -0.6 -1.4 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse5 N.D. -1.1 -0.4 -1.2 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 N.D. -0.4 +0.2 -2.3 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage7;Mouse3 N.D. +0.1 -0.6 -2.0 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 N.D. +0.6 -0.3 -2.6 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse1 N.D. +0.6 -0.2 -2.5 N.D.
mouse_post_colonization Post-colonization (Day 6) - Cage4;Mouse4 N.D. +0.8 -0.3 -2.2 N.D.
mouse_post_colonization Post-colonization (Day 6) - Cage3;Mouse2 N.D. +0.7 -0.3 -2.0 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse1 N.D. +0.7 -0.3 -2.0 N.D.
phage SJC12_cps8_0.1MOI N.D. +1.0 -0.6 -2.0 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage7;Mouse1 N.D. +0.7 -0.1 -2.1 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse1 N.D. +1.1 +0.1 -2.5 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse1 N.D. +1.4 -0.2 -2.3 N.D.
stress BHIS with Fusidic 0.004 mg/ml N.D. -1.9 +0.1 +0.9 N.D.
stress BHIS with Fusidic 0.002 mg/ml N.D. -1.6 -0.4 +1.4 N.D.
stress BHIS with Fusidic 0.002 mg/ml N.D. -1.2 -0.4 +1.2 N.D.
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml N.D. -1.7 -0.2 +2.1 N.D.
stress BHIS with Fusidic 0.004 mg/ml N.D. -1.1 -0.1 +1.6 N.D.
stress Bile salts 0.5 mg/ml N.D. -0.9 -0.2 +1.8 N.D.
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 N.D. -0.9 +0.5 +1.9 N.D.
stress BHIS with Thioridazine 0.0125 mM N.D. -0.5 -0.3 +2.3 N.D.
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