Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2082 and BT2083 are separated by 15 nucleotidesBT2083 and BT2084 are separated by 158 nucleotidesBT2084 and BT2085 are separated by 101 nucleotidesBT2085 and BT2086 are separated by 125 nucleotides BT2082: BT2082 - hypothetical protein (NCBI ptt file), at 2,608,842 to 2,609,627 BT2082 BT2083: BT2083 - hypothetical protein (NCBI ptt file), at 2,609,643 to 2,610,206 BT2083 BT2084: BT2084 - chorismate synthase (NCBI ptt file), at 2,610,365 to 2,611,441 BT2084 BT2085: BT2085 - putative succinyl-diaminopimelate desuccinylase (NCBI ptt file), at 2,611,543 to 2,612,907 BT2085 BT2086: BT2086 - choloylglycine hydrolase (NCBI ptt file), at 2,613,033 to 2,614,091 BT2086
Group Condition BT2082 BT2083 BT2084 BT2085 BT2086
stress BHIS with Doxycycline hyclate 0.0001953125 mM +0.0 -1.5 N.D. -0.6 -0.6
stress BHIS with Trimethoprim 0.0125 mM -0.3 -1.4 N.D. +0.3 -0.8
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml -0.4 -1.5 N.D. +0.3 -0.4
survival aerobic shaking 48 hr copy B -0.3 -2.0 N.D. +0.1 +0.4
stress BHIS with Chlorpromazine 0.1 mM +0.1 -2.0 N.D. +0.7 +0.3
stress BHIS with Thioridazine 0.025 mM +0.0 -1.8 N.D. +0.9 +0.0
stress BHIS with Trimethoprim 0.00625 mM +0.5 -1.0 N.D. +0.4 -0.7
stress BHIS with Thioridazine 0.0125 mM +0.3 -1.2 N.D. +1.0 -0.5
phage DAC23_cps8_0.1MOI +0.1 -1.1 N.D. +0.6 +0.2
stress BHIS with Paraquat dichloride 0.1 mg/ml +0.2 -1.2 N.D. +0.4 +0.5
mouse Post-colonization (Day 4) - Cage1C;Mouse3 +0.8 -0.7 N.D. -0.3 +0.2
stress Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.05 mM -0.5 +0.9 N.D. -0.5 +0.1
phage ARB14_cps1_0.1MOI +0.0 -1.0 N.D. +0.7 +0.3
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM -0.4 -0.5 N.D. +1.2 -0.2
stress BHIS with Dimetridazole 0.0015625 mM -0.5 +0.9 N.D. -0.5 +0.3
stress BHIS with Antimycin A 0.2 mM -0.2 +0.6 N.D. -0.5 +0.6
stress BHIS with Chlorpromazine 0.2 mM +0.4 -1.3 N.D. +0.8 +0.6
phage SJC12_cps8_0.1MOI +0.0 -0.9 N.D. +0.7 +0.8
mouse Post-colonization (Day 7) - Cage1A;Mouse1 +1.4 -0.7 N.D. +0.1 -0.2
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse3 +1.1 -0.2 N.D. +0.4 -0.3
mouse Post-colonization (Day 7) - Cage1C;Mouse1 +1.1 -0.5 N.D. +0.2 +0.2
mouse_post_colonization Post-colonization (Day 1) - Cage2;Mouse2 +0.4 +0.3 N.D. +0.8 -0.4
mouse Post-colonization (Day 7) - Cage1B;Mouse5 +1.5 -0.9 N.D. +0.2 +0.5
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse2 +1.0 +0.4 N.D. +0.2 -0.4
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 +1.2 -0.2 N.D. -0.2 +0.5
mouse Post-colonization (Day 7) - Cage1C;Mouse2 +1.5 +0.1 N.D. +0.1 -0.4
stress BHIS with Rifampicin 0.000048828125 mM -0.3 +1.1 N.D. +0.1 +0.5
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +1.0 -0.3 N.D. +0.2 +0.9
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.1 +0.7 N.D. +0.5 +0.7
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 +1.0 +0.3 N.D. +0.6 -0.0
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