Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BT2069	BT_2070	BT2071	BT2072	BT2073
stress	Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml	+0.0	-1.7	-2.2	-2.2	+0.1
stress	Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml	-0.2	-1.2	-1.8	-1.5	-0.1
stress	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml	-0.2	-1.0	-1.5	-1.5	-0.5
stress	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml	-0.0	-0.7	-1.6	-1.2	+0.1
mouse_coculture	cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003	-0.0	-0.2	-2.0	-1.1	-0.1
mouse_coculture	cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003	-0.2	-0.1	-1.8	-1.4	+0.0
stress	Varel_Bryant_medium_Glucose with Ethanol 3.33 vol%	+0.4	-0.8	-1.1	-1.2	-0.3
carbon source	Stachyose - 70% (C)	+0.2	-0.8	-1.6	-0.5	-0.2
mouse_coculture	cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003	-0.4	-0.2	-1.5	-0.8	+0.1
mouse_coculture	cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003	-0.3	-0.2	-1.7	-0.7	+0.1
nitrogen source	L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	-0.2	-0.7	-0.6	-1.2	-0.0
stress	Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml	+0.0	-0.5	-1.3	-0.9	-0.2
stress	Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml	+0.2	-0.5	-1.2	-1.0	-0.2
mouse_coculture	cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003	-0.3	-0.2	-1.4	-0.8	+0.1
mouse_coculture	cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003	-0.1	-0.3	-1.4	-0.8	+0.1
mouse_coculture	cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003	-0.2	-0.3	-1.3	-0.9	+0.2
carbon source	carbon source (+)-Arabinogalactan, Larch wood 10 mg/ml	+0.1	-0.6	-1.1	-0.9	+0.1
stress	Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml	+0.5	-0.7	-1.1	-0.8	-0.2
stress	Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml	+0.1	-0.0	-2.1	-0.4	+0.1
stress	Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.1 mM	-0.2	-0.7	-1.2	-0.4	+0.3
carbon source	D-Glucose 20mM (C)	+0.3	-0.5	-1.2	-0.5	-0.3
nitrogen source	L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen	+0.3	-0.8	-0.8	-0.9	-0.1
stress	Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml	+0.4	-0.5	-1.0	-0.7	-0.4
mouse_peg_treatment	PEG (Day 1) - Cage3;Mouse1	+0.2	-0.5	-1.1	+0.5	+0.6
mouse_post_colonization	Post-colonization (Day 14) - Cage4;Mouse4	-0.7	-0.3	-0.6	+1.0	+0.4
mouse_peg_treatment	PEG (Day 2) - Cage5;Mouse1	-0.5	-0.0	-0.9	+1.2	+0.5
mouse_peg_treatment	PEG (Day 2) - Cage4;Mouse1	-0.0	-0.4	-0.4	+1.4	+0.7
mouse_peg_treatment	PEG (Day 1 ) - Cage1;Mouse5	+0.0	+0.3	+0.3	+2.2	-0.1
mouse_peg_treatment	PEG (Day 3) - Cage2;Mouse1	+0.0	+0.8	-0.7	+2.1	+0.7
survival	aerobic shaking 48 hr copy A	+0.0	-0.0	+1.1	+1.9	+0.1