Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2058 and BT2059 are separated by 70 nucleotidesBT2059 and BT2060 are separated by 222 nucleotidesBT2060 and BT2061 are separated by 18 nucleotidesBT2061 and BT2062 are separated by 128 nucleotides BT2058: BT2058 - putative isoprenyl synthetase (NCBI ptt file), at 2,577,222 to 2,578,196 BT2058 BT2059: BT2059 - TonB (NCBI ptt file), at 2,578,267 to 2,578,950 BT2059 BT2060: BT2060 - cytidylate kinase (NCBI ptt file), at 2,579,173 to 2,579,862 BT2060 BT2061: BT2061 - penicillin tolerance protein LytB (NCBI ptt file), at 2,579,881 to 2,580,750 BT2061 BT2062: BT2062 - 6-phosphofructokinase (NCBI ptt file), at 2,580,879 to 2,581,859 BT2062
Group Condition BT2058 BT2059 BT2060 BT2061 BT2062
carbon source D-Raffinose (C) N.D. -6.1 N.D. N.D. -0.0
nitrogen source D-Serine (N) N.D. -1.4 N.D. N.D. -4.3
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM N.D. -1.9 N.D. N.D. -3.8
carbon source D-Glucose (C) N.D. -5.6 N.D. N.D. +0.0
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 N.D. -2.6 N.D. N.D. -2.6
carbon source D-Glucose (C) N.D. -4.9 N.D. N.D. -0.2
carbon source NAG (C) N.D. -5.0 N.D. N.D. -0.1
carbon source D-Fructose (C) N.D. -5.1 N.D. N.D. +0.2
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse2 N.D. -2.5 N.D. N.D. -2.4
carbon source D-Glucose (C) N.D. -4.6 N.D. N.D. -0.2
nitrogen source Thymidine (N) N.D. -0.5 N.D. N.D. -4.2
nitrogen source Casamino Acids (N) N.D. -1.4 N.D. N.D. -3.3
carbon source D-Maltose (C) N.D. -4.9 N.D. N.D. +0.4
carbon source D-Mannose (C) N.D. -4.7 N.D. N.D. +0.3
carbon source D-Trehalose (C) N.D. -4.6 N.D. N.D. +0.4
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml N.D. +0.4 N.D. N.D. -4.3
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM N.D. +0.5 N.D. N.D. -4.3
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml N.D. +1.1 N.D. N.D. -4.3
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml N.D. +1.0 N.D. N.D. -3.8
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. +2.2 N.D. N.D. -3.9
stress BHIS with Chlorpromazine 0.1 mM N.D. +1.7 N.D. N.D. -3.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. +1.7 N.D. N.D. -3.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen N.D. +2.7 N.D. N.D. -3.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. +2.8 N.D. N.D. -3.6
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. +2.9 N.D. N.D. -3.8
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen N.D. +2.9 N.D. N.D. -3.7
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. +3.6 N.D. N.D. -3.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. +4.1 N.D. N.D. -3.4
stress BHIS with Vancomycin 0.016 mg/ml N.D. +4.7 N.D. N.D. -0.4
stress BHIS with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM N.D. +6.7 N.D. N.D. -0.0
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