Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT2001 and BT2002 are separated by 124 nucleotidesBT2002 and BT2003 are separated by 63 nucleotidesBT2003 and BT2004 are separated by 12 nucleotidesBT2004 and BT2005 overlap by 4 nucleotides BT2001: BT2001 - membrane-associated zinc metalloprotease (NCBI ptt file), at 2,517,142 to 2,518,497 BT2001 BT2002: BT2002 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (NCBI ptt file), at 2,518,622 to 2,519,794 BT2002 BT2003: BT2003 - putative membrane peptidase (NCBI ptt file), at 2,519,858 to 2,520,715 BT2003 BT2004: BT2004 - RimM protein, required for 16S rRNA processing (NCBI ptt file), at 2,520,728 to 2,521,267 BT2004 BT2005: BT2005 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NCBI ptt file), at 2,521,264 to 2,522,568 BT2005
Group Condition BT2001 BT2002 BT2003 BT2004 BT2005
carbon source L-Rhamnose (C) N.D. N.D. -6.0 N.D. N.D.
carbon source D-Xylose (C) N.D. N.D. -5.8 N.D. N.D.
carbon source D-Galacturonic Acid (C) N.D. N.D. -5.8 N.D. N.D.
carbon source L-Arabinose (C) N.D. N.D. -5.8 N.D. N.D.
carbon source D-Fructose (C) N.D. N.D. -5.7 N.D. N.D.
carbon source D-Glucose (C) N.D. N.D. -5.7 N.D. N.D.
carbon source D-Maltose (C) N.D. N.D. -5.6 N.D. N.D.
carbon source D-Galactose (C) N.D. N.D. -5.6 N.D. N.D.
carbon source Beta-Lactose (C) N.D. N.D. -5.5 N.D. N.D.
carbon source D-Raffinose (C) N.D. N.D. -5.4 N.D. N.D.
carbon source D-Glucose (C) with 20 amino mix N.D. N.D. -4.5 N.D. N.D.
carbon source D-Glucose (C) N.D. N.D. -4.4 N.D. N.D.
carbon source a-Cyclodextrin (C) N.D. N.D. -4.4 N.D. N.D.
carbon source D-Glucose (C) N.D. N.D. -4.4 N.D. N.D.
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml N.D. N.D. -4.3 N.D. N.D.
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml N.D. N.D. -4.1 N.D. N.D.
stress Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml N.D. N.D. -4.0 N.D. N.D.
carbon source D-Glucose 20mM (C) N.D. N.D. -4.0 N.D. N.D.
carbon source D-Trehalose 20mM (C) N.D. N.D. -4.0 N.D. N.D.
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml N.D. N.D. -3.9 N.D. N.D.
stress Varel_Bryant_medium_Glucose with Chlorhexidine diacetate salt 0.003125 mM N.D. N.D. -3.9 N.D. N.D.
carbon source Lactulose 20mM (C) N.D. N.D. -3.9 N.D. N.D.
carbon source L-Fucose (C) N.D. N.D. -3.9 N.D. N.D.
stress Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.1 mM N.D. N.D. -3.9 N.D. N.D.
stress BHIS with sodium fluoride 30 mM N.D. N.D. -3.8 N.D. N.D.
carbon source D-Glucose (C) N.D. N.D. -3.8 N.D. N.D.
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml N.D. N.D. -3.8 N.D. N.D.
stress Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.2 mM N.D. N.D. -3.8 N.D. N.D.
stress BHIS with Levofloxacin 0.0015625 mM N.D. N.D. -3.8 N.D. N.D.
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM N.D. N.D. -3.8 N.D. N.D.
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