Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT1997 and BT1998 are separated by 456 nucleotidesBT1998 and BT1999 are separated by 112 nucleotidesBT1999 and BT2000 are separated by 213 nucleotidesBT2000 and BT2001 are separated by 712 nucleotides BT1997: BT1997 - hypothetical protein (NCBI ptt file), at 2,510,942 to 2,511,346 BT1997 BT1998: BT1998 - anaerobic ribonucleoside-triphosphate reductase (NCBI ptt file), at 2,511,803 to 2,514,196 BT1998 BT1999: BT1999 - anaerobic ribonucleoside-triphosphate reductase activating protein (NCBI ptt file), at 2,514,309 to 2,514,803 BT1999 BT2000: BT2000 - putative transport protein (NCBI ptt file), at 2,515,017 to 2,516,429 BT2000 BT2001: BT2001 - membrane-associated zinc metalloprotease (NCBI ptt file), at 2,517,142 to 2,518,497 BT2001
Group Condition BT1997 BT1998 BT1999 BT2000 BT2001
carbon source D-Ribose (C) -0.9 N.D. N.D. -0.3 N.D.
phage ARB14_cps1_0.1MOI -1.3 N.D. N.D. +0.1 N.D.
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM -1.1 N.D. N.D. -0.0 N.D.
phage HNL05_cps7_0.1MOI -0.8 N.D. N.D. -0.2 N.D.
phage SJC12_cps8_0.1MOI -1.2 N.D. N.D. +0.2 N.D.
phage SJC16_cps8_1MOI -0.8 N.D. N.D. -0.2 N.D.
stress BHIS with Anhydrotetracycline 0.0125 mM -0.8 N.D. N.D. +0.1 N.D.
phage SJC16_cps8_10MOI -1.0 N.D. N.D. +0.2 N.D.
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.8 N.D. N.D. +0.2 N.D.
phage SJC12_cps8_0.1MOI -0.8 N.D. N.D. +0.2 N.D.
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml -0.8 N.D. N.D. +0.3 N.D.
stress Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.1 mM -0.6 N.D. N.D. +0.3 N.D.
phage HNL05_cps7_0.1MOI -0.7 N.D. N.D. +0.4 N.D.
mouse_post_colonization Post-colonization (Day 2) - Cage2;Mouse1 -0.5 N.D. N.D. +0.4 N.D.
carbon source Mannan from Saccharomyces cerevisiae (C) -0.5 N.D. N.D. +0.4 N.D.
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.5 N.D. N.D. +0.6 N.D.
stress Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.05 mM +0.5 N.D. N.D. -0.3 N.D.
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 -0.4 N.D. N.D. +0.6 N.D.
stress BHIS with Dimethyl Sulfoxide 10 vol% +0.8 N.D. N.D. -0.4 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 +0.8 N.D. N.D. -0.2 N.D.
stress BHIS with Dimetridazole 0.00625 mM +0.9 N.D. N.D. -0.1 N.D.
stress Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% +0.6 N.D. N.D. +0.3 N.D.
stress BHIS with Ramoplanin 0.003125 mM +0.7 N.D. N.D. +0.2 N.D.
stress Varel_Bryant_medium_Glucose with Ciprofloxacin Hydrochloride 0.025 mM +0.7 N.D. N.D. +0.2 N.D.
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 +0.7 N.D. N.D. +0.2 N.D.
stress BHIS with Cefoxitin 0.0125 mM +0.6 N.D. N.D. +0.3 N.D.
stress Thallium(I) acetate 0.05 mg/ml +0.4 N.D. N.D. +0.5 N.D.
stress BHIS with Chlorhexidine diacetate salt 0.003125 mM +0.7 N.D. N.D. +0.3 N.D.
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 +1.1 N.D. N.D. -0.1 N.D.
stress BHIS with Irgasan 0.0125 mM +1.2 N.D. N.D. +0.1 N.D.
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