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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT1979 and BT1980 are separated by 146 nucleotides
BT1980 and BT1981 are separated by 111 nucleotides
BT1981 and BT1982 overlap by 4 nucleotides
BT1982 and BT1983 are separated by 2 nucleotides
BT1979: BT1979 - Meso-diaminopimelate D-dehydrogenase (NCBI ptt file), at 2,489,425 to 2,490,324
BT1979
BT1980: BT1980 - transposase (NCBI ptt file), at 2,490,471 to 2,492,132
BT1980
BT1981: BT1981 - hypothetical protein (NCBI ptt file), at 2,492,244 to 2,492,549
BT1981
BT1982: BT1982 - hypothetical protein (NCBI ptt file), at 2,492,546 to 2,492,875
BT1982
BT1983: BT1983 - hemolysin III (NCBI ptt file), at 2,492,878 to 2,493,567
BT1983
Group
Condition
BT1979
BT1980
BT1981
BT1982
BT1983
stress
Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM
-2.8
-0.1
-1.2
-2.1
-3.7
stress
Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM
-1.5
-0.2
-1.2
-1.6
-3.7
carbon source
D-Glucose (C)
-2.6
-0.4
+0.1
-1.5
-3.7
stress
Varel_Bryant_medium_Glucose with Dimetridazole 0.0125 mM
-2.1
-0.3
-1.3
-0.7
-3.8
carbon source
D-Glucose (C)
-3.2
-0.2
-0.1
-1.3
-3.3
stress
Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
-2.3
+0.4
-0.8
-1.0
-4.0
stress
Varel_Bryant_medium_Glucose with Geneticin G418 0.2 mM
-1.9
+0.0
-0.5
-1.4
-3.8
stress
Varel_Bryant_medium_Glucose with Cephalothin 0.1 mM
-1.6
-0.1
-0.8
-1.0
-3.7
stress
Varel_Bryant_medium_Glucose with Dimetridazole 0.025 mM
-2.4
-0.3
-0.7
-0.2
-3.5
stress
Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
-1.3
+0.3
-1.4
-0.8
-3.7
stress
Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.000390625 mM
-2.0
+0.4
-0.3
-1.6
-3.4
stress
Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.00078125 mM
-1.9
+0.1
-0.9
-1.1
-3.1
stress
Varel_Bryant_medium_Glucose with 2-Mercaptopyridine N-oxide 0.2 mM
-2.1
+0.1
-0.2
-0.6
-3.8
stress
Varel_Bryant_medium_Glucose with Chlorhexidine diacetate salt 0.0015625 mM
-2.1
+0.0
-0.7
-0.1
-3.7
stress
Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
-2.7
+0.0
+0.4
-0.9
-3.2
stress
Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
-1.8
+0.5
-0.8
-1.1
-3.0
stress
Varel_Bryant_medium_Glucose with Cefoxitin 0.0125 mM
-1.9
-0.1
-1.0
+0.3
-3.4
stress
Varel_Bryant_medium_Glucose with Dimetridazole 0.0125 mM
-1.5
+0.5
-0.8
-0.6
-3.6
stress
Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
-2.3
+0.5
-0.3
-0.4
-3.4
stress
Varel_Bryant_medium_Glucose with 2-Mercaptopyridine N-oxide 0.1 mM
-2.2
+0.3
+0.1
-0.3
-3.7
stress
Varel_Bryant_medium_Glucose with Ceftriaxone hemi(heptahydrate) 0.1 mM
-1.6
+0.5
-0.4
-0.5
-3.6
stress
Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
-1.9
-0.0
-0.5
+0.6
-3.6
stress
Varel_Bryant_medium_Glucose with Oxytetracycline 0.00009765625 mM
-0.6
+0.4
-1.7
+0.3
-3.7
stress
Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM
-2.6
+0.5
-1.2
+0.4
-2.1
stress
Varel_Bryant_medium_Glucose with Metronidazole 0.0015625 mM
-2.2
+0.4
-0.3
+0.8
-3.5
stress
Varel_Bryant_medium_Glucose with Ramoplanin 0.0015625 mM
-2.5
+0.3
-0.1
+1.4
-3.7
carbon source
Heparin from porcine intestinal mucosa (C)
-2.5
+0.7
+0.6
+0.8
-2.1
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
+2.0
+1.0
+1.6
-1.3
-1.6
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
+3.7
+0.1
+1.4
-0.4
-1.4
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen
+4.0
+0.9
+0.3
+0.6
-0.8
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