Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT1957 and BT1958 are separated by 255 nucleotidesBT1958 and BT1959 are separated by 292 nucleotidesBT1959 and BT1960 are separated by 46 nucleotidesBT1960 and BT1961 are separated by 84 nucleotides BT1957: BT1957 - hypothetical protein (NCBI ptt file), at 2,459,141 to 2,460,058 BT1957 BT1958: BT1958 - hypothetical protein (NCBI ptt file), at 2,460,314 to 2,460,499 BT1958 BT1959: BT1959 - conserved hypothetical protein (NCBI ptt file), at 2,460,792 to 2,461,121 BT1959 BT1960: BT1960 - integrase (NCBI ptt file), at 2,461,168 to 2,461,806 BT1960 BT1961: BT1961 - transposase (NCBI ptt file), at 2,461,891 to 2,462,061 BT1961
Group Condition BT1957 BT1958 BT1959 BT1960 BT1961
stress BHIS with Cephalothin 0.2 mM -0.5 -4.5 N.D. -0.7 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 -2.9 -1.4 N.D. -0.9 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse2 -3.3 -1.3 N.D. -0.0 N.D.
mouse_post_colonization Post-colonization (Day 6) - Cage3;Mouse4 -3.4 -0.5 N.D. -0.4 N.D.
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 -3.5 -0.4 N.D. -0.4 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse3 -4.0 +0.5 N.D. -0.6 N.D.
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse4 -3.5 -0.0 N.D. -0.5 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse4 -2.6 -0.7 N.D. -0.6 N.D.
mouse_post_colonization Post-colonization (Day 6) - Cage2;Mouse3 -3.5 -0.0 N.D. -0.4 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse1 -3.8 +0.3 N.D. -0.4 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage2;Mouse1 -3.9 +0.2 N.D. -0.1 N.D.
carbon source D-Xylose (C) -1.6 -2.0 N.D. -0.2 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse1 -3.7 -0.1 N.D. -0.0 N.D.
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 -2.9 -0.5 N.D. -0.3 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse5 -2.3 -1.2 N.D. -0.2 N.D.
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 -2.8 -1.0 N.D. +0.1 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 -3.7 +0.2 N.D. -0.1 N.D.
carbon source D-Ribose (C) -1.6 -2.3 N.D. +0.3 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse2 -3.7 +0.4 N.D. -0.3 N.D.
carbon source Heparin from porcine intestinal mucosa (C) -0.9 -2.7 N.D. +0.2 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse1 -2.6 -1.0 N.D. +0.3 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse1 -3.0 +0.5 N.D. -0.6 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 -3.3 +0.5 N.D. -0.4 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 -3.4 -0.2 N.D. +0.6 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse5 -3.0 +0.5 N.D. -0.2 N.D.
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 -3.1 +0.3 N.D. +0.2 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage6;Mouse1 -2.8 +0.9 N.D. -0.0 N.D.
mouse_peg_treatment PEG (Day 2) - Cage5;Mouse1 -1.8 -0.9 N.D. +1.0 N.D.
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -3.2 +1.1 N.D. +0.5 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse1 -2.8 +0.6 N.D. +0.5 N.D.
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