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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT1797 and BT1798 are separated by 211 nucleotides
BT1798 and BT1799 are separated by 39 nucleotides
BT1799 and BT1800 are separated by 243 nucleotides
BT1800 and BT1801 overlap by 4 nucleotides
BT1797: BT1797 - putative transcriptional regulator (NCBI ptt file), at 2,248,924 to 2,249,814
BT1797
BT1798: BT1798 - hypothetical protein (NCBI ptt file), at 2,250,026 to 2,251,372
BT1798
BT1799: BT1799 - putative vitamin B12 receptor precursor (NCBI ptt file), at 2,251,412 to 2,254,261
BT1799
BT1800: BT1800 - putative two-component system sensor histidine kinase (NCBI ptt file), at 2,254,505 to 2,256,355
BT1800
BT1801: BT1801 - two-component system sensor histidine kinase (NCBI ptt file), at 2,256,352 to 2,258,313
BT1801
Group
Condition
BT1797
BT1798
BT1799
BT1800
BT1801
carbon source
Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)
-0.9
-0.1
+0.0
-0.3
-0.2
carbon source
Mannan from Saccharomyces cerevisiae; autoclaved 2.5 mg/ml (C)
-0.7
-0.3
+0.2
-0.2
+0.0
carbon source
Mannan from Saccharomyces cerevisiae (C)
-0.6
-0.6
+0.3
-0.1
+0.0
stress
Varel_Bryant_medium_Glucose with Sulfamethizole 0.1 mM
-0.5
-0.4
+0.2
+0.1
-0.3
carbon source
Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
-0.6
-0.4
+0.2
-0.3
+0.3
stress
BHIS with Paraquat dichloride 0.1 mg/ml
-0.7
-0.2
+0.1
-0.1
+0.3
carbon source
(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
-0.6
-0.3
-0.1
+0.3
+0.2
stress
Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7
+0.4
-0.3
-0.1
+0.1
-0.6
stress
BHIS with Thioridazine 0.0125 mM
-0.8
-0.2
-0.1
+0.1
+0.5
stress
Varel_Bryant_medium_Glucose with Chlorhexidine diacetate salt 0.003125 mM
-0.2
-0.7
+0.2
-0.0
+0.3
stress
BHIS with Dimetridazole 0.025 mM
-0.0
-0.9
+0.2
+0.4
+0.1
phage
HNL05_cps7_0.1MOI
-0.8
-0.2
+0.2
-0.1
+0.6
carbon source
(+)-Arabinogalactan; autoclaved 2.5 mg/ml (C)
-0.8
+0.4
+0.1
-0.2
+0.2
stress
BHIS with Chenodeoxycholic 0.25 mg/ml
+0.5
-0.0
+0.2
-0.0
-0.9
carbon source
L-Rhamnose (C)
-0.7
+0.2
-0.1
-0.2
+0.5
carbon source
Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
-0.5
-0.4
+0.3
-0.2
+0.6
phage
SJC12_cps8_0.1MOI
-0.2
-0.7
-0.1
+0.3
+0.6
phage
HNL05_cps7_1MOI
-0.5
-0.2
+0.1
+0.3
+0.3
carbon source
1,4-B-D-Galactobiose (C)
-0.5
+0.2
+0.3
+0.3
-0.2
phage
SJC15_cps8_1MOI
+0.1
-0.7
+0.1
-0.0
+0.6
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.2
-0.5
-0.0
+0.3
+0.5
stress
BHIS with Lithocholic 0.4 mg/ml
+0.7
-0.2
+0.3
-0.2
-0.3
stress
BHIS with Thioridazine 0.025 mM
-0.5
+0.0
+0.2
+0.2
+0.6
mouse_post_colonization
Post-colonization (Day 8) - Cage6;Mouse2
-0.3
+0.1
+0.5
-0.2
+0.4
phage
SJC16_cps8_1MOI
-0.1
-0.1
+0.2
+0.3
+0.7
stress
BHIS with Fusidic 0.002 mg/ml
+0.6
+0.2
+0.3
+0.3
-0.2
mouse_peg_treatment
PEG (Day 3) - Cage2;Mouse1
+0.3
+0.5
+0.2
+0.0
+0.5
phage
DAC20_cps8_1MOI
+0.2
+0.3
+0.1
+0.3
+0.8
phage
DAC19_cps8_1MOI
+0.1
+0.5
+0.4
+0.3
+0.3
phage
DAC23_cps8_10MOI
+0.5
+0.4
+0.5
+0.0
+0.3
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