Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT1750 and BT1751 overlap by 4 nucleotidesBT1751 and BT1752 are separated by 604 nucleotidesBT1752 and BT1753 overlap by 38 nucleotidesBT1753 and BT1754 are separated by 27 nucleotides BT1750: BT1750 - glycine betaine/L-proline transport system permease (NCBI ptt file), at 2,160,624 to 2,161,454 BT1750 BT1751: BT1751 - Glycine betaine transport ATP-binding protein (NCBI ptt file), at 2,161,451 to 2,162,677 BT1751 BT1752: BT1752 - hypothetical protein (NCBI ptt file), at 2,163,282 to 2,164,436 BT1752 BT1753: BT1753 - putative methylated-DNA methyltransferase (NCBI ptt file), at 2,164,399 to 2,164,731 BT1753 BT1754: BT1754 - two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file), at 2,164,759 to 2,167,524 BT1754
Group Condition BT1750 BT1751 BT1752 BT1753 BT1754
stress BHIS with Chloride 350 mM -3.7 -4.2 -0.6 -0.3 -0.1
carbon source D-Fructose (C) +0.4 -0.5 -1.1 +0.0 -4.7
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.3 -0.6 -1.0 -0.3 -3.2
carbon source D-Fructose (C) -0.0 -0.0 -0.9 -0.5 -3.5
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse5 -0.2 -0.2 -1.5 -0.8 -1.7
mouse Post-dosage t1 (Day 1) - Cage1C;Mouse1 -0.2 -0.2 -1.1 -0.2 -2.3
stress BHIS with Rifampicin 0.0000244140625 mM -0.2 -0.4 -1.5 -1.6 -0.3
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse5 +0.3 -0.3 -1.6 -0.5 -1.8
mouse_post_colonization Post-colonization (Day 6) - Cage4;Mouse4 -0.1 -0.1 -2.1 -0.6 -1.0
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 +0.3 -0.3 -1.3 -0.6 -2.1
carbon source Lactulose 20mM (C) -0.1 -0.3 -1.7 -0.1 -1.7
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse1 +0.1 +0.0 -1.7 -0.6 -1.5
mouse_post_colonization Post-colonization (Day 8) - Cage4;Mouse4 +0.2 -0.3 -2.0 -0.3 -1.3
mouse_post_colonization Post-colonization (Day 6) - Cage7;Mouse2 -0.2 -0.2 -2.4 +0.1 -1.0
carbon source Fructooligosaccharides (FOS) (C) +0.2 -0.0 -0.7 -0.4 -2.7
carbon source Levan - from Erwinia herbicola; autoclaved 2.5 mg/ml (C) +0.1 +0.2 -1.4 -0.0 -2.4
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 +0.1 -1.0 -1.4 +0.3 -1.4
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 +0.4 -0.7 -1.2 -0.4 -1.5
stress BHIS with Chlorpromazine 0.2 mM -0.6 -1.2 -1.9 +0.2 +0.2
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 +0.2 -0.5 -1.5 +0.3 -1.9
stress BHIS with Thioridazine 0.025 mM -1.3 -0.9 -0.6 -0.9 +0.4
carbon source Fructooligosaccharides (FOS) (C) +0.6 -0.3 -0.8 +0.5 -3.0
stress BHIS with Trimethoprim 0.00625 mM -0.9 -0.7 -1.2 -0.5 +0.4
mouse_coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.2 -0.7 +1.1 -0.2 -3.0
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse3 +0.6 -0.3 -1.0 -0.3 -1.8
phage DAC23_cps8_10MOI +0.6 -1.2 -1.2 -0.9 +0.2
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 +0.6 -0.5 -1.5 -0.0 -1.2
carbon source D-Fructose 2.5 mg/ml (C) +0.0 +0.4 -1.0 +0.4 -2.2
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 +0.6 +0.0 -1.1 +1.0 -2.4
mouse_coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.3 -0.2 +1.2 +0.0 -2.4
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