Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT1726 and BT1727 are separated by 568 nucleotidesBT1727 and BT1728 are separated by 9 nucleotidesBT1728 and BT1729 are separated by 76 nucleotidesBT1729 and BT1730 overlap by 19 nucleotides BT1726: BT1726 - integrase (NCBI ptt file), at 2,124,568 to 2,125,518 BT1726 BT1727: BT1727 - putative transmembrane sensor (NCBI ptt file), at 2,126,087 to 2,126,938 BT1727 BT1728: BT1728 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 2,126,948 to 2,127,538 BT1728 BT1729: BT1729 - peptide chain release factor 3 (RF-3) (NCBI ptt file), at 2,127,615 to 2,129,213 BT1729 BT1730: BT1730 - putative dTDP-4-dehydrorhamnose reductase (NCBI ptt file), at 2,129,195 to 2,130,043 BT1730
Group Condition BT1726 BT1727 BT1728 BT1729 BT1730
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 -1.7 -0.6 -0.2 -1.9 N.D.
stress BHIS with Trimethoprim 0.00625 mM -1.4 -0.3 +0.6 -3.0 N.D.
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM -0.8 +0.0 -0.4 -2.8 N.D.
stress BHIS with Dimethyl Sulfoxide 9 vol% +0.3 -0.8 +0.2 -3.5 N.D.
stress BHIS with Dimethyl Sulfoxide 10 vol% +0.6 -0.7 -0.0 -3.7 N.D.
stress BHIS with Dimethyl Sulfoxide 9 vol% +0.5 -0.1 +0.1 -4.0 N.D.
carbon source D-Ribose (C) -1.0 +0.5 -0.4 -2.8 N.D.
stress BHIS with Dimethyl Sulfoxide 10 vol% +0.6 -0.5 +0.3 -4.0 N.D.
stress BHIS with Trimethoprim 0.00625 mM -0.8 +0.5 +0.1 -2.8 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse1 -1.4 -0.2 -0.2 -1.1 N.D.
stress BHIS with Vancomycin 0.016 mg/ml +0.0 -0.4 -0.2 -2.2 N.D.
stress BHIS with Trimethoprim 0.0125 mM -0.4 +0.8 -0.1 -2.9 N.D.
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 -1.3 +0.2 +0.1 -1.4 N.D.
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM -0.9 +0.3 +0.0 -1.7 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 -0.6 +0.1 +0.2 -1.8 N.D.
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 -0.2 -0.0 +0.3 -2.2 N.D.
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM +0.4 -0.2 -1.3 -0.9 N.D.
stress BHIS with Doxycycline hyclate 0.000390625 mM +0.3 -0.6 +0.3 -1.8 N.D.
stress BHIS with Fusidic 0.004 mg/ml +0.4 +0.2 +0.3 -2.6 N.D.
stress Varel_Bryant_medium_Glucose with Vancomycin Hydrochloride from Streptomyces orientalis 0.00625 mM -0.7 +0.5 -1.0 -0.5 N.D.
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 -0.5 +0.2 +0.5 -1.6 N.D.
stress BHIS with 5-Fluorouracil 0.1 mM -0.1 +0.6 -0.4 -1.6 N.D.
stress BHIS with Trimethoprim 7.5 uM +0.0 -0.1 +0.6 -1.9 N.D.
stress BHIS with Trimethoprim 15 uM -0.4 +0.5 +0.2 -1.6 N.D.
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM +0.3 +0.7 -0.6 -1.4 N.D.
stress BHIS with 5-Fluorouracil 0.1 mM +0.4 +0.4 +0.3 -1.8 N.D.
phage SJC12_cps8_0.1MOI -1.5 +0.5 +0.7 -0.3 N.D.
stress BHIS with Sulfamonomethoxine 0.2 mM -0.2 +1.2 -0.2 -1.3 N.D.
stress Varel_Bryant medium with Chlorpromazine 0.05 mM +0.7 +1.1 -0.3 -1.7 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen -0.7 +0.9 +1.1 -0.6 N.D.
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