Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 nttRNA-Cys and BT1592 are separated by 263 nucleotidesBT1592 and BT1593 are separated by 383 nucleotidesBT1593 and BT1594 overlap by 16 nucleotidesBT1594 and BT1595 are separated by 113 nucleotides BT_t28: tRNA-Cys - tRNA-Cys (RefSeq), at 1,955,593 to 1,955,664 tRNA-Cys BT1592: BT1592 - putative ferrous iron transport protein (NCBI ptt file), at 1,955,928 to 1,958,414 BT1592 BT1593: BT1593 - putative cell-cycle protein (NCBI ptt file), at 1,958,798 to 1,960,078 BT1593 BT1594: BT1594 - putative ferredoxin (NCBI ptt file), at 1,960,063 to 1,961,022 BT1594 BT1595: BT1595 - transcription termination factor rho (NCBI ptt file), at 1,961,136 to 1,963,304 BT1595
Group Condition BT_t28 BT1592 BT1593 BT1594 BT1595
tRNA-Cys
carbon source D-Glucose (C) N.D. N.D. N.D. -1.8 N.D.
varel_bryant_medium_glucose Varel_Bryant_medium_Glucose N.D. N.D. N.D. -1.7 N.D.
carbon source Hyaluronic from Streptococcus equi (C) N.D. N.D. N.D. -1.5 N.D.
stress Cobalt chloride 0.05 mM N.D. N.D. N.D. -1.5 N.D.
mouse_post_colonization Post-colonization (Day 3) - Cage1;Mouse2 N.D. N.D. N.D. -1.4 N.D.
mouse_post_colonization Post-colonization (Day 2) - Cage7;Mouse2 N.D. N.D. N.D. -1.4 N.D.
nitrogen source Ammonium chloride (N) N.D. N.D. N.D. -1.4 N.D.
stress Nickel (II) chloride 0.01 mM N.D. N.D. N.D. -1.4 N.D.
phage DAC20_cps8_1MOI N.D. N.D. N.D. -1.4 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen N.D. N.D. N.D. -1.3 N.D.
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM N.D. N.D. N.D. -1.2 N.D.
stress Varel_Bryant medium with Tetrazolium violet 0.025 mM N.D. N.D. N.D. -1.2 N.D.
carbon source Rhamnogalacturonan - from potato; autoclaved 2.5 mg/ml (C) N.D. N.D. N.D. -1.2 N.D.
stress Varel_Bryant medium with Thioridazine 0.0125 mM N.D. N.D. N.D. -1.2 N.D.
carbon source Mannan from Saccharomyces cerevisiae (C) N.D. N.D. N.D. -1.2 N.D.
mouse_peg_treatment PEG (Day 1) - Cage2;Mouse1 N.D. N.D. N.D. -1.1 N.D.
nitrogen source Ammonium chloride (N) N.D. N.D. N.D. -1.1 N.D.
mouse_coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. N.D. N.D. -1.1 N.D.
phage SJC16_cps8_1MOI N.D. N.D. N.D. -1.1 N.D.
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) N.D. N.D. N.D. -1.1 N.D.
stress copper (II) chloride 0.05 mM N.D. N.D. N.D. -1.1 N.D.
stress BHIS with Doxycycline hyclate 0.0001953125 mM N.D. N.D. N.D. -1.1 N.D.
carbon source D-Trehalose 20mM (C) N.D. N.D. N.D. -1.1 N.D.
stress Bile salts 0.5 mg/ml N.D. N.D. N.D. -1.1 N.D.
stress Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.0125 mM N.D. N.D. N.D. -1.1 N.D.
stress Cobalt chloride 0.05 mM N.D. N.D. N.D. -1.0 N.D.
carbon source Melibiose (C) N.D. N.D. N.D. -1.0 N.D.
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM N.D. N.D. N.D. +1.1 N.D.
stress BHIS with Simvastatin 30 uM N.D. N.D. N.D. +1.1 N.D.
stress BHIS with Ceftazidime 0.5 mg/ml N.D. N.D. N.D. +1.3 N.D.
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