Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT1534 and BT1535 are separated by 29 nucleotidesBT1535 and BT1536 are separated by 28 nucleotidesBT1536 and BT1537 are separated by 243 nucleotidesBT1537 and BT1538 are separated by 54 nucleotides BT1534: BT1534 - hypothetical protein (NCBI ptt file), at 1,893,713 to 1,894,339 BT1534 BT1535: BT1535 - ABC transporter ATP-binding protein (NCBI ptt file), at 1,894,369 to 1,895,034 BT1535 BT1536: BT1536 - ABC transporter permease (NCBI ptt file), at 1,895,063 to 1,896,310 BT1536 BT1537: BT1537 - putative NADH dehydrogenase (NCBI ptt file), at 1,896,554 to 1,897,945 BT1537 BT1538: BT1538 - hemagglutinin (NCBI ptt file), at 1,898,000 to 1,898,905 BT1538
Group Condition BT1534 BT1535 BT1536 BT1537 BT1538
stress Varel_Bryant medium with Chlorpromazine 0.05 mM +0.1 -0.8 -0.8 -3.0 N.D.
mouse Post-colonization (Day 2) - Cage1A;Mouse3 -1.7 -0.7 -1.9 -0.1 N.D.
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -1.5 -1.2 -1.5 -0.1 N.D.
mouse_coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -0.2 +0.2 -3.7 +0.1 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse2 -1.1 +0.9 -3.0 -0.3 N.D.
mouse_coculture cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 +0.7 -0.8 -2.8 -0.5 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 +0.8 -1.0 -2.9 -0.0 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage7;Mouse2 -0.0 +1.2 -3.7 -0.5 N.D.
mouse Post-colonization (Day 4) - Cage1B;Mouse4 -1.9 +1.0 -2.2 +0.2 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage1;Mouse2 -0.2 +0.9 -3.4 +0.3 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 +0.5 +1.2 -3.5 -0.2 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse1 +0.2 +1.1 -3.2 -0.1 N.D.
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 -0.3 +1.5 -2.7 -0.4 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage4;Mouse4 -0.1 +1.3 -2.3 -0.5 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse5 -0.1 +1.4 -2.6 -0.2 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage3;Mouse4 +0.3 +1.6 -3.1 -0.2 N.D.
mouse_post_colonization Post-colonization (Day 6) - Cage1;Mouse4 +0.4 +0.9 -2.5 -0.3 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse2 +0.6 +0.7 -2.9 +0.2 N.D.
mouse_peg_treatment PEG (Day 3) - Cage1;Mouse2 +0.2 +1.2 -2.0 -0.7 N.D.
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM +0.4 +1.0 -0.8 -1.9 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage4;Mouse5 +0.7 +1.3 -3.0 +0.1 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse3 +1.2 +1.1 -2.6 -0.4 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse1 +0.3 +1.3 -2.3 +0.3 N.D.
mouse_peg_treatment PEG (Day 3) - Cage3;Mouse2 +0.6 +1.9 -2.4 -0.2 N.D.
stress BHIS with Chlorpromazine 0.2 mM +1.5 +0.7 -0.2 -2.0 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse1 +0.8 +2.2 -2.8 -0.0 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage1;Mouse3 +0.7 +2.2 -2.6 -0.1 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage7;Mouse2 +0.9 +1.2 -2.2 +0.4 N.D.
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 +1.5 +2.0 -2.5 -0.3 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_noNitrogen +1.6 -0.6 +2.0 -0.2 N.D.
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