Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT1525 and BT1526 are separated by 149 nucleotidesBT1526 and BT1527 are separated by 108 nucleotidesBT1527 and BT1528 are separated by 107 nucleotidesBT1528 and BT1529 are separated by 21 nucleotides BT1525: BT1525 - phosphatidylglycerophosphatase A (NCBI ptt file), at 1,879,378 to 1,879,857 BT1525 BT1526: BT1526 - myo-inositol-1-phosphate synthase (NCBI ptt file), at 1,880,007 to 1,881,296 BT1526 BT1527: BT1527 - hypothetical protein (NCBI ptt file), at 1,881,405 to 1,883,957 BT1527 BT1528: BT1528 - two-component system sensor histidine kinase (NCBI ptt file), at 1,884,065 to 1,885,357 BT1528 BT1529: BT1529 - two-component system response regulator (NCBI ptt file), at 1,885,379 to 1,886,728 BT1529
Group Condition BT1525 BT1526 BT1527 BT1528 BT1529
stress BHIS with Thioridazine 0.0125 mM N.D. -2.9 -0.5 -0.7 -1.1
stress BHIS with Chlorpromazine 0.1 mM N.D. -2.9 -1.6 -0.1 -0.4
carbon source D-Raffinose (C) N.D. -3.7 -0.0 -0.3 -0.2
carbon source D-Trehalose (C) N.D. -3.9 -0.1 +0.1 -0.0
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. -2.6 +0.0 -0.7 -0.5
stress BHIS with Chlorpromazine 0.2 mM N.D. -2.3 -1.1 -0.5 +0.1
mouse_coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. -1.7 -0.1 -1.1 -0.6
carbon source D-Maltose (C) N.D. -3.1 +0.2 -0.5 +0.0
carbon source L-Rhamnose (C) N.D. -2.6 -0.3 -0.1 -0.3
mouse_coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. -1.8 +0.0 -0.8 -0.6
stress BHIS with Zinc Pyrithione 0.05 mM N.D. -1.9 -0.7 +0.1 -0.6
carbon source D-Glucose (C) N.D. -3.0 +0.1 -0.2 -0.0
carbon source Beta-Lactose (C) N.D. -3.0 +0.0 +0.1 +0.1
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM N.D. -2.1 +0.8 -0.7 -0.7
carbon source L-Fucose (C) N.D. -2.5 -0.1 +0.4 -0.4
carbon source D-Galactose (C) N.D. -2.9 -0.1 +0.2 +0.4
carbon source L-Arabinose (C) N.D. -2.7 +0.2 +0.2 -0.0
carbon source D-Glucose (C) N.D. -2.2 +0.2 +0.2 -0.6
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM N.D. -1.6 +1.3 -0.6 -0.1
stress BHIS with Fusidic 0.002 mg/ml N.D. -1.9 -0.2 +0.5 +0.6
stress BHIS with sodium fluoride 30 mM N.D. -2.0 +0.4 +0.1 +0.6
stress BHIS with Trimethoprim 0.00625 mM N.D. +1.4 -0.3 -0.8 -0.6
phage SJC12_cps8_0.1MOI N.D. +1.4 +0.1 +0.4 -1.3
phage SJC12_cps8_0.1MOI N.D. +1.9 +0.1 +0.2 -1.0
phage DAC23_cps8_0.1MOI N.D. +1.7 +0.4 +0.2 -0.7
stress Bile salts 0.5 mg/ml N.D. -0.5 +1.8 +1.1 +0.5
mouse_post_colonization Post-colonization (Day 3) - Cage2;Mouse2 N.D. +0.6 -0.1 +1.1 +1.2
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM N.D. +2.8 +0.1 +0.2 -0.1
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 N.D. +4.2 +1.1 +0.6 +0.0
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 N.D. +3.7 +1.3 +1.2 -0.1
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