Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT1360 and BT1361 are separated by 33 nucleotidesBT1361 and BT1362 are separated by 37 nucleotidesBT1362 and BT1363 overlap by 1 nucleotidesBT1363 and BT1364 are separated by 79 nucleotides BT1360: BT1360 - tRNA/rRNA methyltransferase (NCBI ptt file), at 1,687,459 to 1,688,202 BT1360 BT1361: BT1361 - DNA repair protein recN (Recombination protein N) (NCBI ptt file), at 1,688,236 to 1,689,903 BT1361 BT1362: BT1362 - flavoprotein (NCBI ptt file), at 1,689,941 to 1,691,143 BT1362 BT1363: BT1363 - DNA Pol III Epsilon Chain (NCBI ptt file), at 1,691,143 to 1,691,976 BT1363 BT1364: BT1364 - DNA polymerase III, beta chain (NCBI ptt file), at 1,692,056 to 1,693,180 BT1364
Group Condition BT1360 BT1361 BT1362 BT1363 BT1364
stress BHIS with Fusidic 0.004 mg/ml N.D. -4.2 N.D. -1.6 N.D.
stress BHIS with Fusidic 0.004 mg/ml N.D. -3.4 N.D. -2.2 N.D.
stress Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 6 N.D. -1.0 N.D. -4.4 N.D.
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml N.D. -1.6 N.D. -3.7 N.D.
stress Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM N.D. -3.3 N.D. -1.7 N.D.
stress Varel_Bryant_medium_Glucose with Furaltadone 0.1 mM N.D. -2.6 N.D. -2.2 N.D.
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse5 N.D. -2.5 N.D. -2.2 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse1 N.D. -2.1 N.D. -2.6 N.D.
stress Varel_Bryant_medium_Glucose with Lithocholic 0.2 mg/ml N.D. -0.8 N.D. -3.9 N.D.
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.075 mg/ml N.D. -0.7 N.D. -3.9 N.D.
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml N.D. -0.8 N.D. -3.7 N.D.
stress BHIS with Dimetridazole 0.0125 mM N.D. -3.1 N.D. -1.3 N.D.
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.25 mg/ml N.D. -0.5 N.D. -3.9 N.D.
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml N.D. -0.6 N.D. -3.7 N.D.
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 N.D. -2.5 N.D. -1.8 N.D.
carbon source D-Mannose (C) N.D. -0.3 N.D. -3.9 N.D.
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml N.D. -0.8 N.D. -3.4 N.D.
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse2 N.D. -1.9 N.D. -2.2 N.D.
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 N.D. -3.2 N.D. -0.9 N.D.
carbon source D-Glucose 20mM (C) N.D. -0.3 N.D. -3.7 N.D.
mouse_post_colonization Post-colonization (Day 4) - Cage4;Mouse1 N.D. -1.2 N.D. -2.7 N.D.
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse1 N.D. -1.5 N.D. -2.5 N.D.
mouse_post_colonization Post-colonization (Day 6) - Cage2;Mouse3 N.D. -1.7 N.D. -2.3 N.D.
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.1 mg/ml N.D. -0.7 N.D. -3.2 N.D.
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM N.D. -1.5 N.D. -2.4 N.D.
mouse_coculture cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. -1.6 N.D. -2.3 N.D.
mouse_post_colonization Post-colonization (Day 8) - Cage1;Mouse2 N.D. -1.6 N.D. -2.3 N.D.
stress BHIS with Doxycycline hyclate 0.000390625 mM N.D. -2.1 N.D. -1.8 N.D.
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 N.D. -3.6 N.D. +0.4 N.D.
stress BHIS with Paraquat dichloride 0.1 mg/ml N.D. -2.2 N.D. +4.2 N.D.
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