Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT1346 and BT1347 are separated by 8 nucleotidesBT1347 and BT1348 are separated by 25 nucleotidesBT1348 and BT1349 overlap by 4 nucleotidesBT1349 and BT1350 overlap by 13 nucleotides BT1346: BT1346 - capsule biosynthesis protein capA (NCBI ptt file), at 1,671,731 to 1,672,756 BT1346 BT1347: BT1347 - conserved hypothetical protein (NCBI ptt file), at 1,672,765 to 1,673,622 BT1347 BT1348: BT1348 - CDP-abequose synthase (NCBI ptt file), at 1,673,648 to 1,674,538 BT1348 BT1349: BT1349 - conserved hypothetical protein (NCBI ptt file), at 1,674,535 to 1,674,981 BT1349 BT1350: BT1350 - CDP-glucose 4,6-dehydratase (NCBI ptt file), at 1,674,969 to 1,676,069 BT1350
Group Condition BT1346 BT1347 BT1348 BT1349 BT1350
mouse_post_colonization Post-colonization (Day 8) - Cage5;Mouse4 -3.1 -2.8 -2.2 N.D. -2.2
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse1 -2.8 -2.6 -2.2 N.D. -2.3
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse1 -2.6 -2.7 -2.3 N.D. -2.0
mouse_post_colonization Post-colonization (Day 8) - Cage4;Mouse4 -2.9 -2.7 -2.1 N.D. -1.8
mouse_post_colonization Post-colonization (Day 10) - Cage2;Mouse1 -2.2 -2.7 -2.4 N.D. -2.1
mouse Post-colonization (Day 7) - Cage1C;Mouse1 -2.1 -3.2 -2.2 N.D. -1.9
mouse_post_colonization Post-colonization (Day 12) - Cage3;Mouse1 -2.4 -2.9 -1.9 N.D. -2.1
mouse_post_colonization Post-colonization (Day 10) - Cage4;Mouse5 -3.0 -2.4 -1.9 N.D. -1.9
mouse_post_colonization Post-colonization (Day 6) - Cage4;Mouse4 -2.0 -3.0 -2.5 N.D. -1.8
mouse_post_colonization Post-colonization (Day 4) - Cage1;Mouse2 -2.2 -2.5 -2.6 N.D. -1.9
mouse_post_colonization Post-colonization (Day 8) - Cage1;Mouse2 -2.4 -2.6 -1.9 N.D. -2.2
mouse_post_colonization Post-colonization (Day 4) - Cage1;Mouse4 -2.3 -2.9 -2.0 N.D. -1.8
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse1 -2.3 -2.4 -2.0 N.D. -2.4
mouse_post_colonization Post-colonization (Day 10) - Cage6;Mouse1 -2.9 -2.6 -1.5 N.D. -2.0
mouse Post-colonization (Day 4) - Cage1A;Mouse3 -2.6 -2.3 -2.5 N.D. -1.6
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -2.2 -2.0 -2.7 N.D. -2.2
mouse_post_colonization Post-colonization (Day 8) - Cage4;Mouse5 -2.5 -2.6 -1.9 N.D. -1.9
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 -2.5 -2.4 -2.1 N.D. -1.9
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse3 -2.2 -2.8 -2.1 N.D. -1.7
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 -2.4 -2.7 -1.9 N.D. -1.8
mouse_post_colonization Post-colonization (Day 6) - Cage4;Mouse1 -2.2 -2.8 -1.2 N.D. -2.6
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse1 -2.7 -2.4 -1.7 N.D. -1.9
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse2 -2.7 -2.4 -1.9 N.D. -1.8
mouse_post_colonization Post-colonization (Day 6) - Cage7;Mouse1 -1.9 -2.9 -1.8 N.D. -2.0
mouse_post_colonization Post-colonization (Day 6) - Cage1;Mouse3 -2.5 -2.7 -1.7 N.D. -1.7
mouse_post_colonization Post-colonization (Day 6) - Cage3;Mouse2 -3.0 -1.9 -2.0 N.D. -1.6
mouse_post_colonization Post-colonization (Day 3) - Cage6;Mouse1 -2.7 -1.9 -2.1 N.D. -1.7
mouse_post_colonization Post-colonization (Day 8) - Cage5;Mouse2 -2.6 -2.3 -2.1 N.D. -1.4
carbon source Hyaluronic from Streptococcus equi +5.0 +5.1 +5.4 N.D. +4.9
carbon source Hyaluronic from Streptococcus equi +5.4 +5.3 +5.6 N.D. +5.0
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