Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT1229 and BT1230 are separated by 117 nucleotidesBT1230 and BT1231 are separated by 520 nucleotidesBT1231 and tRNA-Ser are separated by 95 nucleotidestRNA-Ser and tRNA-Glu are separated by 63 nucleotides BT1229: BT1229 - conserved hypothetical protein, putative membrane protein (NCBI ptt file), at 1,531,038 to 1,532,705 BT1229 BT1230: BT1230 - hypothetical protein (NCBI ptt file), at 1,532,823 to 1,533,323 BT1230 BT1231: BT1231 - hypothetical protein (NCBI ptt file), at 1,533,844 to 1,534,047 BT1231 BT_t21: tRNA-Ser - tRNA-Ser (RefSeq), at 1,534,143 to 1,534,232 tRNA-Ser BT_t22: tRNA-Glu - tRNA-Glu (RefSeq), at 1,534,296 to 1,534,367 tRNA-Glu
Group Condition BT1229 BT1230 BT1231 BT_t21 BT_t22
tRNA-Ser tRNA-Glu
carbon source Maltitol 20mM (C) -2.4 -1.1 N.D. N.D. N.D.
carbon source Isomaltose (C) -1.5 -1.9 N.D. N.D. N.D.
carbon source D-Maltose (C) -3.0 -0.3 N.D. N.D. N.D.
carbon source carbon source Rhamnogalacturonan-II from apple juice concentrate 10 mg/ml -2.0 -0.9 N.D. N.D. N.D.
stress BHIS with Dimethyl Sulfoxide 10 vol% -0.7 -2.1 N.D. N.D. N.D.
stress BHIS with Dimethyl Sulfoxide 10 vol% -0.4 -2.4 N.D. N.D. N.D.
carbon source Levan - from Erwinia herbicola -1.1 -1.6 N.D. N.D. N.D.
carbon source D-Trehalose (C) -1.6 -1.0 N.D. N.D. N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.2 -1.4 N.D. N.D. N.D.
mouse Post-dosage t1 (Day 1) - Cage1C;Mouse1 -1.5 -1.0 N.D. N.D. N.D.
carbon source Melibiose (C) -0.6 -1.9 N.D. N.D. N.D.
carbon source D-Glucose (C) -2.5 +0.1 N.D. N.D. N.D.
stress BHIS with Benzethonium chloride 0.002 mM -2.2 +0.3 N.D. N.D. N.D.
stress Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml +1.0 -2.3 N.D. N.D. N.D.
carbon source Red Arabinan from sugar-beet (C) +1.0 -1.7 N.D. N.D. N.D.
phage DAC19_cps8_0.1MOI -1.7 +1.0 N.D. N.D. N.D.
stress BHIS with Doxycycline hyclate 0.000390625 mM +1.1 -1.7 N.D. N.D. N.D.
stress BHIS with Thioridazine 0.0125 mM -1.7 +1.6 N.D. N.D. N.D.
stress BHIS with Doxycycline hyclate 0.0001953125 mM +1.5 -1.2 N.D. N.D. N.D.
stress Varel_Bryant_medium_Glucose with Rifampicin 0.0001953125 mM +1.5 -1.2 N.D. N.D. N.D.
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM -1.0 +1.5 N.D. N.D. N.D.
carbon source Pectin +1.6 -0.9 N.D. N.D. N.D.
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +1.7 +0.9 N.D. N.D. N.D.
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM +1.7 +0.9 N.D. N.D. N.D.
stress BHIS with Trimethoprim 0.0125 mM +1.3 +1.5 N.D. N.D. N.D.
carbon source D-Glucose 20mM (C) +1.7 +1.2 N.D. N.D. N.D.
phage SJC15_cps8_1MOI +1.4 +1.5 N.D. N.D. N.D.
stress BHIS with Sulfamonomethoxine 0.1 mM +1.1 +1.9 N.D. N.D. N.D.
survival aerobic shaking 48 hr copy B +2.0 +1.4 N.D. N.D. N.D.
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM +0.4 +3.1 N.D. N.D. N.D.
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