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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT0939 and BT0940 are separated by 194 nucleotides
BT0940 and BT0941 are separated by 216 nucleotides
BT0941 and BT0942 are separated by 416 nucleotides
BT0942 and BT0943 are separated by 231 nucleotides
BT0939: BT0939 - hypothetical protein (NCBI ptt file), at 1,149,490 to 1,149,741
BT0939
BT0940: BT0940 - hypothetical protein (NCBI ptt file), at 1,149,936 to 1,150,400
BT0940
BT0941: BT0941 - hypothetical protein (NCBI ptt file), at 1,150,617 to 1,150,880
BT0941
BT0942: BT0942 - putative dinitrogenase reductase activating glycohydrolase (NCBI ptt file), at 1,151,297 to 1,152,085
BT0942
BT0943: BT0943 - penicillin-binding protein 2B (PBP-2B) (NCBI ptt file), at 1,152,317 to 1,153,219
BT0943
Group
Condition
BT0939
BT0940
BT0941
BT0942
BT0943
stress
BHIS with Dimethyl Sulfoxide 10 vol%
-0.1
-1.5
-0.4
-0.8
+0.3
stress
Thallium(I) acetate 0.025 mg/ml
-1.1
+0.6
-0.1
-0.6
-0.4
stress
Varel_Bryant_medium_Glucose with Sulfamethizole 0.2 mM
-0.3
+0.4
-1.7
+0.3
-0.2
carbon source
Hyaluronic from Streptococcus equi
+0.3
-1.0
-1.0
+0.6
-0.1
stress
Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
-1.3
+0.8
-0.8
+0.4
-0.1
stress
BHIS with Dimetridazole 0.025 mM
+0.2
-0.8
-1.3
+0.7
+0.3
mouse_peg_treatment
PEG (Day 3) - Cage3;Mouse2
-0.6
-1.1
+0.5
-0.1
+0.3
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.9
+0.7
-2.0
+0.8
+0.5
mouse_post_colonization
Post-colonization (Day 4) - Cage2;Mouse1
-0.9
+0.5
-0.7
+0.4
-0.1
mouse_post_colonization
Post-colonization (Day 8) - Cage5;Mouse3
-0.6
+0.7
-0.7
+0.5
-0.4
stress
Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
+0.6
+0.5
-1.7
-0.0
+0.2
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.3
+0.3
-1.2
+1.4
-0.4
stress
BHIS with Oxytetracycline 0.000390625 mM
+0.4
-1.2
+0.7
-0.2
+0.2
mouse
Post-colonization (Day 4) - Cage1B;Mouse5
+0.7
+0.1
+0.4
-1.0
-0.4
stress
Varel_Bryant_medium_Glucose with Levofloxacin 0.0015625 mM
+0.2
+1.3
-0.9
-0.2
-0.2
mouse_peg_treatment
PEG (Day 1) - Cage3;Mouse1
-0.8
+0.6
+0.5
-0.5
+0.4
mouse_post_colonization
Post-colonization (Day 4) - Cage4;Mouse4
-1.2
+0.5
+0.7
+0.3
+0.1
nitrogen source
Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.9
+0.8
-0.3
+0.5
+0.3
stress
Varel_Bryant_medium_Glucose with Dimetridazole 0.0125 mM
+0.7
+0.5
-0.6
+0.4
-0.6
nitrogen source
L-aspartic (N)
-0.9
+0.9
+0.6
+0.3
-0.4
stress
BHIS with Doxycycline hyclate 0.0001953125 mM
+1.1
-0.1
+0.1
+0.8
-0.6
stress
BHIS with Sulfamonomethoxine 0.2 mM
-0.7
+0.1
+1.5
+0.1
+0.1
mouse_post_colonization
Post-colonization (Day 6) - Cage6;Mouse2
-0.4
+0.9
+0.8
-0.3
+0.3
mouse
Post-colonization (Day 7) - Cage1B;Mouse5
+0.5
+0.9
+0.7
-0.2
-0.5
stress
Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM
+1.0
+0.8
+0.8
-0.6
+0.1
stress
BHIS with 5-Fluorouracil 0.2 mM
+0.2
+0.6
+1.2
+0.6
-0.2
phage
SJC16_cps8_10MOI
+0.9
+0.7
+0.5
+0.6
-0.3
stress
BHIS with Chlorpromazine 0.1 mM
+0.7
+0.9
+1.1
+0.1
-0.1
stress
BHIS with Dimethyl Sulfoxide 0.2 vol%
+1.2
+0.2
+1.0
+0.4
+0.5
phage
HNL05_cps7_1MOI
+1.3
+0.4
+0.8
+0.4
+0.3
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