Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0791 and BT0792 are separated by 88 nucleotidesBT0792 and BT0793 are separated by 12 nucleotidesBT0793 and BT0794 are separated by 102 nucleotidesBT0794 and BT0795 are separated by 128 nucleotides BT0791: BT0791 - conserved hypothetical protein (NCBI ptt file), at 980,672 to 981,403 BT0791 BT0792: BT0792 - xylulokinase (EC 2.7.1.17) (from data), at 981,492 to 982,985 BT0792 BT0793: BT0793 - xylose isomerase (NCBI ptt file), at 982,998 to 984,314 BT0793 BT0794: BT0794 - D-xylose-proton symporter (D-xylose transporter) (NCBI ptt file), at 984,417 to 985,871 BT0794 BT0795: BT0795 - conserved hypothetical protein (NCBI ptt file), at 986,000 to 986,620 BT0795
Group Condition BT0791 BT0792 BT0793 BT0794 BT0795
carbon source D-Xylose (C) -1.2 -5.2 -5.8 -4.5 +0.1
carbon source D-Xylose (C) -1.5 -4.3 -4.6 -3.8 -0.2
carbon source D-Xylose 2.5 mg/ml (C) -1.1 -1.6 -1.4 -2.5 +0.7
carbon source D-Xylose 2.5 mg/ml (C) -0.7 -1.4 -1.3 -2.2 +1.0
survival aerobic shaking 48 hr copy A -1.9 -1.0 -0.8 -0.2 +0.4
carbon source Xylan from corn core; autoclaved 2.5 mg/ml (C) -0.4 -0.8 -1.1 -0.8 +0.0
carbon source (+)-Arabinogalactan (C) -0.2 -0.8 -0.4 -0.7 -1.0
stress Thallium(I) acetate 0.01 mg/ml -0.1 -1.3 -0.7 -0.5 -0.4
carbon source 1,4-B-D-Galactobiose (C) +0.1 -0.8 -0.7 +0.0 -1.6
stress BHIS with Doxycycline hyclate 0.000390625 mM -0.1 +0.2 -1.2 -1.4 -0.2
stress BHIS with Chloride 350 mM +0.6 -0.1 -0.5 -0.5 -1.4
nitrogen source L-Valine (N) +0.3 -1.1 -0.6 -0.7 +0.4
carbon source Mannan from Saccharomyces cerevisiae (C) +1.1 -1.3 -0.6 -0.1 -0.7
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) +0.7 -0.2 -0.9 +0.6 -1.6
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) +0.4 -0.2 -0.2 +0.5 -1.8
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 +0.0 -0.9 +1.0 -0.2 -1.2
stress BHIS with Cephalothin 0.1 mM -1.2 -0.2 +0.1 -0.7 +0.9
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM +0.1 -0.5 -1.5 -0.2 +1.1
stress Varel_Bryant_medium_Glucose with Zinc Pyrithione 0.05 mM +0.0 +0.7 +0.6 -0.5 -1.6
carbon source Mannan from Saccharomyces cerevisiae (C) +1.2 +0.4 -0.9 +0.4 -1.6
stress BHIS with Sulfaquinoxaline 0.1 mM -1.5 +0.3 +0.7 -0.3 +0.6
mouse_post_colonization Post-colonization (Day 1) - Cage5;Mouse4 +0.3 -1.5 +1.1 -0.2 +0.5
stress BHIS with Trimethoprim 0.0125 mM -1.4 +1.1 +0.7 -0.5 +0.7
stress BHIS with Chlorpromazine 0.2 mM -1.2 +1.8 -0.1 +0.3 -0.1
phage DAC16_cps7_1MOI -1.2 +0.2 +0.3 +0.2 +1.5
stress BHIS with Chlorpromazine 0.1 mM -0.8 +1.0 +0.6 -0.6 +0.8
stress BHIS with 5-Fluorouracil 0.1 mM -0.9 +0.3 +1.9 +0.2 -0.1
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen +0.2 +0.8 -0.5 -0.3 +1.3
phage SJC12_cps8_0.1MOI -1.0 +0.5 +0.8 +0.6 +0.7
stress BHIS with Trimethoprim 0.00625 mM -0.5 +0.6 +1.7 +0.1 +0.7
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