Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0789 and BT0790 are separated by 50 nucleotidesBT0790 and BT0791 are separated by 340 nucleotidesBT0791 and BT0792 are separated by 88 nucleotidesBT0792 and BT0793 are separated by 12 nucleotides BT0789: BT0789 - malonyl CoA-acyl carrier protein transacylase (NCBI ptt file), at 978,557 to 979,444 BT0789 BT0790: BT0790 - phosphomethylpyrimidine kinase (NCBI ptt file), at 979,495 to 980,331 BT0790 BT0791: BT0791 - conserved hypothetical protein (NCBI ptt file), at 980,672 to 981,403 BT0791 BT0792: BT0792 - xylulokinase (EC 2.7.1.17) (from data), at 981,492 to 982,985 BT0792 BT0793: BT0793 - xylose isomerase (NCBI ptt file), at 982,998 to 984,314 BT0793
Group Condition BT0789 BT0790 BT0791 BT0792 BT0793
carbon source D-Xylose (C) N.D. -0.4 -1.2 -5.2 -5.8
carbon source D-Xylose (C) N.D. -0.8 -1.5 -4.3 -4.6
carbon source D-Xylose 2.5 mg/ml (C) N.D. -0.3 -1.1 -1.6 -1.4
carbon source D-Trehalose 20mM (C) N.D. -2.8 -0.9 -0.4 -0.2
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml N.D. -4.0 +0.0 -0.2 -0.0
nitrogen source Ammonium chloride (N) N.D. -2.2 -0.4 -0.5 -1.0
carbon source Rhamnogalacturonan - from potato (C) N.D. -2.9 -0.0 -0.3 -0.7
nitrogen source Ammonium chloride (N) N.D. -2.4 +0.2 -0.8 -0.8
carbon source Maltotetraose (C) N.D. -2.3 -0.2 -0.9 -0.3
carbon source Agro_defined_trehalose 1x (C) N.D. -3.3 -0.5 -0.3 +0.5
carbon source palatinose (C) N.D. -2.7 +0.3 -0.4 -0.8
carbon source D-Arabinose (C) N.D. -2.8 -0.0 -0.5 -0.2
stress Thallium(I) acetate 0.01 mg/ml N.D. -1.4 -0.1 -1.3 -0.7
stress Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml N.D. -2.9 +0.2 -0.2 -0.4
carbon source D-Xylose 2.5 mg/ml (C) N.D. +0.2 -0.7 -1.4 -1.3
carbon source Stachyose - 70% (C) N.D. -2.6 +0.4 -0.7 +0.1
carbon source Maltohexaose (C) N.D. -2.2 +0.4 -0.9 +0.0
survival aerobic shaking 48 hr copy A N.D. +1.1 -1.9 -1.0 -0.8
mouse_post_colonization Post-colonization (Day 8) - Cage1;Mouse4 N.D. -2.4 +0.4 -0.8 +0.3
carbon source Melibiose (C) N.D. -2.3 +0.5 -0.5 +0.1
carbon source Mannan from Saccharomyces cerevisiae (C) N.D. -0.8 +1.1 -1.3 -0.6
survival aerobic shaking 48 hr copy B N.D. +1.4 -1.1 +0.2 -0.9
carbon source Mannan from Saccharomyces cerevisiae (C) N.D. -1.1 +1.2 +0.4 -0.9
stress BHIS with Chlorpromazine 0.2 mM N.D. +1.4 -1.6 +0.3 +0.1
phage SJC15_cps8_1MOI N.D. +1.9 -0.2 +0.1 -1.4
mouse_post_colonization Post-colonization (Day 1) - Cage5;Mouse4 N.D. +0.8 +0.3 -1.5 +1.1
stress BHIS with Sulfaquinoxaline 0.1 mM N.D. +1.5 -1.5 +0.3 +0.7
stress BHIS with Chlorpromazine 0.1 mM N.D. +1.1 -0.8 +1.0 +0.6
stress BHIS with 5-Fluorouracil 0.1 mM N.D. +0.6 -0.9 +0.3 +1.9
stress BHIS with Trimethoprim 0.00625 mM N.D. +1.3 -0.5 +0.6 +1.7
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