Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0745 and BT0746 are separated by 3 nucleotidesBT0746 and BT0747 are separated by 83 nucleotidesBT0747 and BT0748 are separated by 88 nucleotidesBT0748 and BT0749 are separated by 327 nucleotides BT0745: BT0745 - 3-deoxy-manno-octulosonate cytidylyltransferase (NCBI ptt file), at 923,309 to 924,061 BT0745 BT0746: BT0746 - putative zinc protease (NCBI ptt file), at 924,065 to 925,348 BT0746 BT0747: BT0747 - putative phosphatidylinositol-4-phosphate 5-kinase (NCBI ptt file), at 925,432 to 926,601 BT0747 BT0748: BT0748 - ribose-phosphate pyrophosphokinase (NCBI ptt file), at 926,690 to 927,607 BT0748 BT0749: BT0749 - putative two-component system sensor histidine kinase (NCBI ptt file), at 927,935 to 932,182 BT0749
Group Condition BT0745 BT0746 BT0747 BT0748 BT0749
stress BHIS with perchlorate 150 mM N.D. -2.8 -3.2 N.D. -1.4
stress BHIS with perchlorate 150 mM N.D. -2.1 -3.5 N.D. -1.6
stress BHIS with perchlorate 100 mM N.D. -2.1 -3.4 N.D. -1.3
stress BHIS with perchlorate 100 mM N.D. -2.2 -2.4 N.D. -1.1
stress BHIS with Dimethyl Sulfoxide 10 vol% N.D. -0.4 -3.5 N.D. -0.6
carbon source D-Mannose (C) N.D. -0.6 -3.2 N.D. -0.5
carbon source D-Galactose (C) N.D. -0.1 -4.0 N.D. -0.1
stress BHIS with Cephalothin 0.625 mg/ml N.D. -0.2 -2.8 N.D. -0.7
carbon source D-Fructose (C) N.D. -0.4 -3.5 N.D. +0.2
stress BHIS with Vancomycin 0.016 mg/ml N.D. -0.3 -2.1 N.D. -1.3
mouse_coculture cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. -0.9 -2.3 N.D. -0.5
carbon source D-Fructose (C) N.D. -0.2 -3.1 N.D. -0.2
stress BHIS with Cephalothin 0.625 mg/ml N.D. +0.0 -2.2 N.D. -1.4
stress Varel_Bryant_medium_Glucose with Bile salts 0.25 mg/mL; pH 7 N.D. -0.8 -2.4 N.D. -0.3
carbon source a-Cyclodextrin (C) N.D. +0.2 -3.3 N.D. -0.2
mouse_coculture cage1; mouse3; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. -0.8 -2.2 N.D. -0.2
stress Varel_Bryant_medium_Glucose with Vancomycin Hydrochloride from Streptomyces orientalis 0.0125 mM N.D. -0.6 -1.2 N.D. -1.3
mouse_coculture cage1; mouse2; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. -0.9 -2.2 N.D. -0.1
carbon source D-Glucose (C) N.D. +0.0 -2.9 N.D. -0.3
stress BHIS with Dimethyl Sulfoxide 9 vol% N.D. +0.1 -3.4 N.D. +0.1
stress BHIS with Dimethyl Sulfoxide 10 vol% N.D. +0.9 -3.2 N.D. -0.7
mouse_coculture cage1; mouse1; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. +0.1 -2.3 N.D. -0.7
carbon source NAG (C) N.D. +0.0 -3.0 N.D. +0.2
carbon source D-Mannose (C) N.D. +0.4 -2.9 N.D. -0.3
carbon source D-Raffinose (C) N.D. +0.3 -2.6 N.D. -0.3
carbon source D-Trehalose (C) N.D. +0.5 -2.4 N.D. -0.5
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.125 mg/ml N.D. +0.5 -2.4 N.D. -0.3
mouse_post_colonization Post-colonization (Day 6) - Cage3;Mouse4 N.D. -0.6 -1.3 N.D. +1.2
stress Varel_Bryant_medium_Glucose with Chenodeoxycholic 0.5 mg/ml N.D. +1.5 -1.7 N.D. -0.4
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse2 N.D. -0.8 -1.0 N.D. +1.6
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