Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0658 and BT0659 are separated by 89 nucleotidesBT0659 and BT0660 are separated by 188 nucleotidesBT0660 and BT0661 are separated by 758 nucleotidesBT0661 and BT0662 are separated by 359 nucleotides BT0658: BT0658 - hypothetical protein (NCBI ptt file), at 810,944 to 811,639 BT0658 BT0659: BT0659 - hypothetical protein (NCBI ptt file), at 811,729 to 812,766 BT0659 BT0660: BT0660 - conserved hypothetical protein (NCBI ptt file), at 812,955 to 814,106 BT0660 BT0661: BT0661 - hypothetical protein (NCBI ptt file), at 814,865 to 816,091 BT0661 BT0662: BT0662 - hypothetical protein (NCBI ptt file), at 816,451 to 818,247 BT0662
Group Condition BT0658 BT0659 BT0660 BT0661 BT0662
carbon source Levan - from Erwinia herbicola; autoclaved 2.5 mg/ml (C) -1.3 -0.4 -1.2 +0.1 -0.0
stress Varel_Bryant_medium_Glucose with Trimethoprim 0.025 mM -2.6 -0.6 +0.4 +0.4 -0.0
stress Varel_Bryant_medium_Glucose with Vancomycin Hydrochloride from Streptomyces orientalis 0.00625 mM -1.4 -0.0 +0.3 +0.4 -0.8
nitrogen source Ammonium chloride (N) -0.5 +0.5 -1.3 +0.0 -0.3
stress BHIS with Simvastatin 30 uM -1.2 -0.4 -0.6 +0.1 +0.6
stress Varel_Bryant_medium_Glucose with Deoxycholic 0.2 mg/ml -2.0 +0.2 +0.4 -0.1 +0.1
phage HNL05_cps7_1MOI -2.0 -0.2 +0.1 +0.3 +0.5
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 -2.6 +0.1 +0.1 +0.7 +0.3
stress BHIS with Zinc Pyrithione 0.05 mM -1.6 -0.5 +0.2 -0.0 +0.6
stress Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml +0.9 -0.4 -0.6 -0.0 -0.6
phage DAC16_cps7_10MOI -0.8 +0.3 +0.7 -0.6 -0.4
stress BHIS with Doxycycline hyclate 0.000390625 mM -1.1 +0.8 -0.1 +0.4 -0.7
stress Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM +0.8 +0.2 -0.4 -0.6 -0.6
stress BHIS with Simvastatin 30 uM -1.0 +0.4 -0.8 +1.0 -0.2
stress BHIS with Chlorpromazine 0.1 mM -1.7 +0.5 +0.5 +0.1 +0.1
stress BHIS with Chloride 350 mM +1.0 -0.3 +0.2 -0.5 -0.7
mouse_coculture cage1; mouse3; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 -1.4 +0.4 +0.6 +0.4 +0.0
mouse_peg_treatment PEG (Day 3) - Cage2;Mouse1 -1.5 -0.0 +0.7 +0.8 +0.1
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -1.2 +0.6 +0.7 +0.1 -0.2
stress BHIS with Dimetridazole 0.025 mM +1.0 +0.8 -0.2 -0.8 -0.8
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 -0.6 -0.1 +1.0 +0.3 -0.5
stress Varel_Bryant_medium_Glucose with Bile salts 0.5 mg/mL; pH 7 -1.3 -0.0 +0.6 +0.7 +0.6
mouse Post-colonization (Day 7) - Cage1C;Mouse2 -0.6 +0.5 +1.2 -0.1 -0.4
stress BHIS with Chlorpromazine 0.2 mM -0.8 +0.4 +1.1 +0.2 +0.2
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 -0.7 +0.4 +0.8 +0.8 -0.1
stress BHIS with Trimethoprim 0.00625 mM -0.5 +0.7 +1.2 -0.1 +0.2
stress BHIS with Trimethoprim 0.00625 mM -0.8 +0.5 +0.7 +0.4 +0.9
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 -0.4 +0.4 +0.4 +0.5 +0.9
phage SJC16_cps8_10MOI -0.5 +0.6 +1.0 +0.7 +0.1
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 -0.3 +0.6 +1.0 +1.0 +0.2
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