Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0626 and BT0627 are separated by 35 nucleotidesBT0627 and BT0628 are separated by 7 nucleotidesBT0628 and BT0629 are separated by 161 nucleotidesBT0629 and BT0630 are separated by 30 nucleotides BT0626: BT0626 - phenylalanyl-tRNA synthetase beta chain (NCBI ptt file), at 771,763 to 774,225 BT0626 BT0627: BT0627 - conserved hypothetical protein, with a conserved domain of unknown function (NCBI ptt file), at 774,261 to 775,004 BT0627 BT0628: BT0628 - conserved hypothetical protein (NCBI ptt file), at 775,012 to 775,257 BT0628 BT0629: BT0629 - Mn2+ and Fe2+ transport protein (NCBI ptt file), at 775,419 to 776,675 BT0629 BT0630: BT0630 - exodeoxyribonuclease (NCBI ptt file), at 776,706 to 777,467 BT0630
Group Condition BT0626 BT0627 BT0628 BT0629 BT0630
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 N.D. N.D. N.D. -1.8 -0.6
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen N.D. N.D. N.D. -1.1 -1.0
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen N.D. N.D. N.D. -1.5 -0.6
mouse Post-colonization (Day 7) - Cage1B;Mouse5 N.D. N.D. N.D. -1.6 -0.2
stress BHIS with Geneticin G418 0.2 mM N.D. N.D. N.D. -1.0 -0.8
mouse_post_colonization Post-colonization (Day 14) - Cage2;Mouse2 N.D. N.D. N.D. -1.5 -0.2
mouse_peg_treatment PEG (Day 1) - Cage4;Mouse1 N.D. N.D. N.D. -1.1 -0.6
mouse_post_colonization Post-colonization (Day 12) - Cage2;Mouse1 N.D. N.D. N.D. -1.7 +0.0
mouse_post_colonization Post-colonization (Day 2) - Cage2;Mouse3 N.D. N.D. N.D. -0.8 -0.9
stress 101 uM BPS, BHI 1x protoporphyrin for 24 hours. N.D. N.D. N.D. -1.9 +0.2
mouse_peg_treatment PEG (Day 2) - Cage3;Mouse3 N.D. N.D. N.D. -1.1 -0.5
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 N.D. N.D. N.D. -0.8 -0.8
carbon source carbon source a1-Acid Glycoprotein from bovine plasma 10 mg/ml N.D. N.D. N.D. -1.5 -0.1
stress BHIS with Doxycycline hyclate 0.000390625 mM N.D. N.D. N.D. -1.4 -0.2
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse4 N.D. N.D. N.D. -1.3 -0.3
stress BHIS with Deoxycholic 0.2 mg/ml N.D. N.D. N.D. -1.5 +0.1
stress 103 uM BPS, BHI 1x protoporphyrin for 24 hours. N.D. N.D. N.D. -1.4 +0.3
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse2 N.D. N.D. N.D. -1.4 +0.4
stress BHIS with DAMPA 60 uM N.D. N.D. N.D. -1.3 +0.4
phage SJC12_cps8_0.1MOI N.D. N.D. N.D. +0.6 -1.3
carbon source D-Leucrose (C) N.D. N.D. N.D. -1.1 +0.5
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen N.D. N.D. N.D. +1.0 -1.5
survival aerobic shaking 48 hr copy A N.D. N.D. N.D. -1.2 +0.8
phage SJC16_cps8_1MOI N.D. N.D. N.D. +0.7 -0.9
survival aerobic shaking 48 hr copy B N.D. N.D. N.D. -1.0 +0.8
nitrogen source Glycine (N) N.D. N.D. N.D. -1.0 +0.8
phage HNL05_cps7_0.1MOI N.D. N.D. N.D. +0.8 -0.8
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 N.D. N.D. N.D. +0.8 -0.7
stress BHIS with Paraquat dichloride 0.1 mg/ml N.D. N.D. N.D. +0.9 -0.7
stress BHIS with Paraquat dichloride 0.1 mg/ml N.D. N.D. N.D. +1.0 -0.6
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