Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0560 and BT0561 are separated by 16 nucleotidesBT0561 and BT0562 overlap by 22 nucleotidesBT0562 and BT0563 are separated by 2 nucleotidesBT0563 and BT0564 are separated by 11 nucleotides BT0560: BT0560 - outer membrane efflux protein (NCBI ptt file), at 695,883 to 697,112 BT0560 BT0561: BT0561 - conserved hypothetical protein, putative membrane protein (NCBI ptt file), at 697,129 to 698,043 BT0561 BT0562: BT0562 - putative ABC transporter ATP-binding protein (NCBI ptt file), at 698,022 to 699,491 BT0562 BT0563: BT0563 - putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file), at 699,494 to 700,597 BT0563 BT0564: BT0564 - putative ABC transporter permease protein (NCBI ptt file), at 700,609 to 701,724 BT0564
Group Condition BT0560 BT0561 BT0562 BT0563 BT0564
stress Varel_Bryant_medium_Glucose with Benzethonium chloride 0.000390625 mM +0.0 -1.2 -0.6 -1.0 -0.8
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 -0.9 +0.1 -0.6 -1.2 -1.0
stress Varel_Bryant_medium_Glucose with Geneticin G418 0.2 mM -1.2 -1.2 +0.1 -0.3 -0.7
stress BHIS with Doxycycline hyclate 0.00009765625 mM -1.1 +0.0 -0.6 -1.4 -0.3
stress BHIS with Cefoxitin 0.0125 mM -1.3 -1.0 -0.0 -0.7 -0.1
mouse_post_colonization Post-colonization (Day 2) - Cage3;Mouse2 -0.4 -1.0 -0.1 -1.3 -0.2
stress BHIS with Benzethonium chloride 0.00078125 mM -0.6 -0.2 -0.1 -1.6 -0.5
mouse Post-colonization (Day 7) - Cage1B;Mouse5 -0.2 -0.7 -1.0 -1.1 +0.2
mouse_peg_treatment PEG (Day 2) - Cage4;Mouse1 -0.9 -0.9 +0.2 -0.9 -0.0
stress BHIS with Anhydrotetracycline 0.00078125 mM -0.5 -1.4 +0.3 -0.8 -0.2
carbon source 6-O-Acetyl-D-glucose (C) -1.0 -0.7 +0.4 -0.5 -0.4
stress BHIS with Econazole nitrate salt 0.0125 mM +0.4 -0.1 -1.0 -0.7 -0.7
stress BHIS with Rifampicin 0.000048828125 mM -0.4 -1.2 +0.5 -1.0 +0.1
mouse_peg_treatment PEG (Day 1 ) - Cage1;Mouse5 +0.5 -1.9 +0.1 -0.6 -0.1
stress BHIS with Dimethyl Sulfoxide 0.05 vol% -0.6 -0.2 +0.5 -1.2 -0.5
stress Cobalt chloride 0.05 mM +0.3 -1.2 +0.2 -0.7 -0.5
mouse_post_colonization Post-colonization (Day 8) - Cage3;Mouse4 -1.1 -0.3 +0.2 -1.0 +0.4
mouse_post_colonization Post-colonization (Day 8) - Cage2;Mouse3 +0.6 -1.2 -0.0 -0.6 -0.4
stress BHIS with Dimethyl Sulfoxide 10 vol% -1.4 +0.4 -0.3 -0.7 +0.4
phage HNL05_cps7_1MOI +0.8 -2.1 -0.0 +0.3 -0.6
stress BHIS with Fusidic 0.004 mg/ml -1.0 -0.1 +0.2 -1.2 +0.5
stress BHIS with Ceftazidime 0.5 mg/ml +0.7 -1.3 -0.9 -0.0 +0.2
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse2 +0.8 -0.9 -0.6 -1.2 +0.6
stress BHIS with Cephalothin 0.625 mg/ml -0.4 -0.1 -0.8 -0.9 +0.9
mouse_post_colonization Post-colonization (Day 6) - Cage6;Mouse2 +0.5 -0.7 +0.4 -1.3 +0.1
stress BHIS with Cephalothin 0.2 mM +0.1 +0.4 +0.7 -0.9 -1.1
stress BHIS with Dimethyl Sulfoxide 10 vol% -1.1 +1.0 +0.3 -0.6 +0.5
stress BHIS with Doxycycline hyclate 0.0001953125 mM +0.9 +0.4 +1.1 -1.1 -0.8
mouse_post_colonization Post-colonization (Day 10) - Cage5;Mouse5 +0.7 -0.7 +0.3 -0.4 +0.7
stress Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM -0.8 +1.6 +0.2 +0.5 +0.5
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