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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT0560 and BT0561 are separated by 16 nucleotides
BT0561 and BT0562 overlap by 22 nucleotides
BT0562 and BT0563 are separated by 2 nucleotides
BT0563 and BT0564 are separated by 11 nucleotides
BT0560: BT0560 - outer membrane efflux protein (NCBI ptt file), at 695,883 to 697,112
BT0560
BT0561: BT0561 - conserved hypothetical protein, putative membrane protein (NCBI ptt file), at 697,129 to 698,043
BT0561
BT0562: BT0562 - putative ABC transporter ATP-binding protein (NCBI ptt file), at 698,022 to 699,491
BT0562
BT0563: BT0563 - putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file), at 699,494 to 700,597
BT0563
BT0564: BT0564 - putative ABC transporter permease protein (NCBI ptt file), at 700,609 to 701,724
BT0564
Group
Condition
BT0560
BT0561
BT0562
BT0563
BT0564
stress
Varel_Bryant_medium_Glucose with Benzethonium chloride 0.000390625 mM
+0.0
-1.2
-0.6
-1.0
-0.8
mouse_post_colonization
Post-colonization (Day 1) - Cage6;Mouse1
-0.9
+0.1
-0.6
-1.2
-1.0
stress
Varel_Bryant_medium_Glucose with Geneticin G418 0.2 mM
-1.2
-1.2
+0.1
-0.3
-0.7
stress
BHIS with Doxycycline hyclate 0.00009765625 mM
-1.1
+0.0
-0.6
-1.4
-0.3
stress
BHIS with Cefoxitin 0.0125 mM
-1.3
-1.0
-0.0
-0.7
-0.1
mouse_post_colonization
Post-colonization (Day 2) - Cage3;Mouse2
-0.4
-1.0
-0.1
-1.3
-0.2
stress
BHIS with Benzethonium chloride 0.00078125 mM
-0.6
-0.2
-0.1
-1.6
-0.5
mouse
Post-colonization (Day 7) - Cage1B;Mouse5
-0.2
-0.7
-1.0
-1.1
+0.2
mouse_peg_treatment
PEG (Day 2) - Cage4;Mouse1
-0.9
-0.9
+0.2
-0.9
-0.0
stress
BHIS with Anhydrotetracycline 0.00078125 mM
-0.5
-1.4
+0.3
-0.8
-0.2
carbon source
6-O-Acetyl-D-glucose (C)
-1.0
-0.7
+0.4
-0.5
-0.4
stress
BHIS with Econazole nitrate salt 0.0125 mM
+0.4
-0.1
-1.0
-0.7
-0.7
stress
BHIS with Rifampicin 0.000048828125 mM
-0.4
-1.2
+0.5
-1.0
+0.1
mouse_peg_treatment
PEG (Day 1 ) - Cage1;Mouse5
+0.5
-1.9
+0.1
-0.6
-0.1
stress
BHIS with Dimethyl Sulfoxide 0.05 vol%
-0.6
-0.2
+0.5
-1.2
-0.5
stress
Cobalt chloride 0.05 mM
+0.3
-1.2
+0.2
-0.7
-0.5
mouse_post_colonization
Post-colonization (Day 8) - Cage3;Mouse4
-1.1
-0.3
+0.2
-1.0
+0.4
mouse_post_colonization
Post-colonization (Day 8) - Cage2;Mouse3
+0.6
-1.2
-0.0
-0.6
-0.4
stress
BHIS with Dimethyl Sulfoxide 10 vol%
-1.4
+0.4
-0.3
-0.7
+0.4
phage
HNL05_cps7_1MOI
+0.8
-2.1
-0.0
+0.3
-0.6
stress
BHIS with Fusidic 0.004 mg/ml
-1.0
-0.1
+0.2
-1.2
+0.5
stress
BHIS with Ceftazidime 0.5 mg/ml
+0.7
-1.3
-0.9
-0.0
+0.2
mouse_post_colonization
Post-colonization (Day 12) - Cage5;Mouse2
+0.8
-0.9
-0.6
-1.2
+0.6
stress
BHIS with Cephalothin 0.625 mg/ml
-0.4
-0.1
-0.8
-0.9
+0.9
mouse_post_colonization
Post-colonization (Day 6) - Cage6;Mouse2
+0.5
-0.7
+0.4
-1.3
+0.1
stress
BHIS with Cephalothin 0.2 mM
+0.1
+0.4
+0.7
-0.9
-1.1
stress
BHIS with Dimethyl Sulfoxide 10 vol%
-1.1
+1.0
+0.3
-0.6
+0.5
stress
BHIS with Doxycycline hyclate 0.0001953125 mM
+0.9
+0.4
+1.1
-1.1
-0.8
mouse_post_colonization
Post-colonization (Day 10) - Cage5;Mouse5
+0.7
-0.7
+0.3
-0.4
+0.7
stress
Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM
-0.8
+1.6
+0.2
+0.5
+0.5
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