Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0432 and tRNA-Thr are separated by 66 nucleotidestRNA-Thr and BT0433 are separated by 129 nucleotidesBT0433 and BT0434 are separated by 339 nucleotidesBT0434 and BT0435 are separated by 38 nucleotides BT0432: BT0432 - putative endonuclease BB0411 (NCBI ptt file), at 519,272 to 520,150 BT0432 BT_t02: tRNA-Thr - tRNA-Thr (RefSeq), at 520,217 to 520,289 tRNA-Thr BT0433: BT0433 - putative xylose repressor (NCBI ptt file), at 520,419 to 521,627 BT0433 BT0434: BT0434 - conserved hypothetical protein (NCBI ptt file), at 521,967 to 523,850 BT0434 BT0435: BT0435 - hypothetical protein (NCBI ptt file), at 523,889 to 524,989 BT0435
Group Condition BT0432 BT_t02 BT0433 BT0434 BT0435
tRNA-Thr
stress BHIS with Doxycycline hyclate 0.0001953125 mM -1.3 N.D. N.D. -0.1 -1.6
stress BHIS with Thioridazine 0.025 mM -0.2 N.D. N.D. -0.9 -1.5
phage SJC15_cps8_1MOI -0.6 N.D. N.D. -0.5 -0.8
stress BHIS with Chenodeoxycholic 0.25 mg/ml +0.3 N.D. N.D. -0.7 -1.4
carbon source Heparin from porcine intestinal mucosa (C) -0.6 N.D. N.D. -0.6 -0.6
phage SJC15_cps8_1MOI -1.1 N.D. N.D. +0.1 -0.8
stress BHIS with Chenodeoxycholic 0.25 mg/ml +0.0 N.D. N.D. -0.5 -1.2
nitrogen source Ammonium chloride (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen -0.1 N.D. N.D. -0.6 -1.0
phage HNL05_cps7_0.1MOI +0.2 N.D. N.D. -1.0 -0.8
stress BHIS with Ceftazidime 0.5 mg/ml -0.4 N.D. N.D. +0.3 -1.4
phage HNL05_cps7_0.1MOI +0.7 N.D. N.D. -0.6 -1.5
phage HNL05_cps7_1MOI +0.4 N.D. N.D. -0.3 -1.5
stress BHIS with Deoxycholic 0.2 mg/ml +0.6 N.D. N.D. -0.6 -1.3
control NoPhage +0.2 N.D. N.D. -0.4 -1.1
stress BHIS with Lithocholic 0.4 mg/ml +0.5 N.D. N.D. -0.4 -1.3
mouse Post-colonization (Day 7) - Cage1C;Mouse2 +0.6 N.D. N.D. -0.3 -1.4
survival aerobic shaking 48 hr copy B +0.8 N.D. N.D. -0.1 -1.7
mouse_post_colonization Post-colonization (Day 14) - Cage3;Mouse1 +0.6 N.D. N.D. -0.4 -0.9
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM +0.5 N.D. N.D. -0.9 -0.4
carbon source Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C) -0.9 N.D. N.D. -0.4 +0.6
stress BHIS with Cefoxitin 0.025 mM +0.0 N.D. N.D. +0.5 -1.2
mouse_post_colonization Post-colonization (Day 10) - Cage1;Mouse2 +0.6 N.D. N.D. -0.3 -0.8
carbon source Mannan from Saccharomyces cerevisiae (C) -0.8 N.D. N.D. -0.3 +0.7
stress BHIS with Dimethyl Sulfoxide 10 vol% -1.1 N.D. N.D. +0.4 +0.5
mouse_coculture cage1; mouse2; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 +0.5 N.D. N.D. +0.3 -0.9
stress BHIS with Econazole nitrate salt 0.01 mM +0.9 N.D. N.D. -0.7 -0.2
stress BHIS with Dimethyl Sulfoxide 10 vol% -1.1 N.D. N.D. +0.3 +1.0
stress BHIS with Dimethyl Sulfoxide 9 vol% -0.7 N.D. N.D. +0.1 +1.2
mouse_post_colonization Post-colonization (Day 1) - Cage3;Mouse1 -0.5 N.D. N.D. +0.2 +1.0
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 +0.2 N.D. N.D. -0.1 +1.7
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