Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0377 and BT0378 are separated by 53 nucleotidesBT0378 and BT0379 are separated by 34 nucleotidesBT0379 and BT0380 are separated by 4 nucleotidesBT0380 and BT0381 are separated by 34 nucleotides BT0377: BT0377 - conserved hypothetical protein (NCBI ptt file), at 463,994 to 464,353 BT0377 BT0378: BT0378 - capsular polysaccharide biosynthesis protein capD (NCBI ptt file), at 464,407 to 466,332 BT0378 BT0379: BT0379 - UDP-glucose 6-dehydrogenase (NCBI ptt file), at 466,367 to 467,683 BT0379 BT0380: BT0380 - nucleotide sugar epimerase (NCBI ptt file), at 467,688 to 468,761 BT0380 BT0381: BT0381 - capsular polysaccharide biosynthesis protein capD (NCBI ptt file), at 468,796 to 469,845 BT0381
Group Condition BT0377 BT0378 BT0379 BT0380 BT0381
phage HNL05_cps7_0.1MOI N.D. -1.6 +0.0 -2.1 -0.4
carbon source Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (~7.5 mM 3-keto-trehalose) 0.5x (C) N.D. -2.2 -0.3 -0.6 -0.3
carbon source 6-O-Acetyl-D-glucose (C) N.D. -0.6 -0.7 -1.5 -0.6
carbon source Pectin (C) N.D. -0.4 -0.7 -1.7 -0.5
stress Varel_Bryant_medium_Glucose with Cephalothin 0.1 mM N.D. -2.4 +0.1 -0.5 -0.4
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse1 N.D. -1.3 -0.3 -1.3 -0.2
stress Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM N.D. -1.9 -0.5 -0.3 -0.3
stress Varel_Bryant medium with Chlorpromazine 0.05 mM N.D. -1.0 -0.4 -1.1 -0.4
stress Nickel (II) chloride 0.01 mM N.D. -2.2 -0.8 +0.1 +0.1
mouse_post_colonization Post-colonization (Day 10) - Cage3;Mouse3 N.D. -1.4 -0.4 -1.1 +0.1
carbon source (+)-Arabinogalactan (C) N.D. +0.8 -1.0 -1.0 -1.2
stress BHIS with Ramoplanin 0.003125 mM N.D. -2.2 -0.0 -0.7 +0.5
stress Varel_Bryant_medium_Glucose with Antimycin A 0.2 mM N.D. -1.9 -0.7 +0.1 +0.3
phage SJC16_cps8_10MOI N.D. -0.7 -1.4 -0.4 +0.4
mouse_post_colonization Post-colonization (Day 2) - Cage4;Mouse4 N.D. -2.6 +0.1 +0.4 +0.2
phage HNL05_cps7_1MOI N.D. -0.8 +0.5 -1.5 +0.1
carbon source D-Glucose 20mM (C) N.D. +0.9 -0.7 -1.1 -0.3
stress BHIS with Trimethoprim 0.00625 mM N.D. -2.2 +0.7 -0.2 +0.7
carbon source (+)-Arabinogalactan (C) N.D. +1.3 -0.9 -0.8 -0.6
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 N.D. -2.0 +0.6 +0.3 +0.1
mouse_coculture cage1; mouse1; day3; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 N.D. -1.8 +0.9 -0.2 +0.3
stress BHIS with 5-Fluorouracil 0.2 mM N.D. -2.0 +0.4 +0.2 +0.9
stress BHIS with Thioridazine 0.025 mM N.D. -1.5 +0.9 -0.3 +0.5
stress BHIS with 5-Fluorouracil 0.1 mM N.D. -1.6 +0.9 +0.3 +0.4
carbon source Levan - from Erwinia herbicola (C) N.D. +1.0 +0.5 -0.5 -0.9
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) N.D. +1.7 -1.0 -0.0 -0.4
stress BHIS with 5-Fluorouracil 0.1 mM N.D. -1.1 +0.7 -0.2 +1.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) N.D. +1.3 -0.6 -0.7 +0.6
carbon source Hyaluronic from Streptococcus equi N.D. +3.5 +0.8 +1.5 +1.3
carbon source Hyaluronic from Streptococcus equi N.D. +2.2 +2.0 +1.9 +1.3
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