Fitness for 5 genes in Bacteroides thetaiotaomicron VPI-5482

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500 ntBT0371 and BT0372 are separated by 52 nucleotidesBT0372 and BT0373 are separated by 228 nucleotidesBT0373 and BT0374 are separated by 148 nucleotidesBT0374 and BT0375 are separated by 369 nucleotides BT0371: BT0371 - glucose/galactose transporter (NCBI ptt file), at 456,639 to 457,949 BT0371 BT0372: BT0372 - aldose 1-epimerase precursor (NCBI ptt file), at 458,002 to 459,099 BT0372 BT0373: BT0373 - mannose-6-phosphate isomerase (NCBI ptt file), at 459,328 to 460,299 BT0373 BT0374: BT0374 - conserved hypothetical protein (NCBI ptt file), at 460,448 to 461,998 BT0374 BT0375: BT0375 - integrase (NCBI ptt file), at 462,368 to 463,057 BT0375
Group Condition BT0371 BT0372 BT0373 BT0374 BT0375
stress BHIS with Fusidic 0.004 mg/ml N.D. -2.6 N.D. -0.5 -0.6
mouse Post-colonization (Day 4) - Cage1B;Mouse4 N.D. -2.6 N.D. -1.1 +0.1
mouse_post_colonization Post-colonization (Day 14) - Cage5;Mouse1 N.D. -1.6 N.D. -1.5 -0.5
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse2 N.D. -1.1 N.D. -1.5 -0.9
mouse_post_colonization Post-colonization (Day 14) - Cage1;Mouse3 N.D. -1.1 N.D. -1.0 -1.2
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse3 N.D. -0.9 N.D. -0.6 -1.9
stress BHIS with Cephalothin 0.625 mg/ml N.D. -0.9 N.D. -0.6 -1.7
mouse_post_colonization Post-colonization (Day 12) - Cage7;Mouse1 N.D. -0.8 N.D. -1.7 -0.4
stress BHIS with Fusidic 0.004 mg/ml N.D. -1.8 N.D. -0.9 -0.3
mouse Post-colonization (Day 7) - Cage1B;Mouse5 N.D. -2.1 N.D. -1.0 +0.2
phage SJC12_cps8_0.1MOI N.D. -0.5 N.D. -2.0 -0.4
mouse_post_colonization Post-colonization (Day 8) - Cage6;Mouse2 N.D. -1.8 N.D. -1.0 +0.1
carbon source L-Fucose (C) N.D. -1.1 N.D. -0.8 -0.8
carbon source Beta-Lactose (C) N.D. -2.0 N.D. -0.2 -0.5
mouse_peg_treatment PEG (Day 1) - Cage3;Mouse1 N.D. -1.4 N.D. -0.2 -1.0
stress Varel_Bryant_medium_Glucose with Chlorpromazine 0.1 mM N.D. -1.8 N.D. -0.6 -0.2
control NoPhage N.D. -1.0 N.D. -1.3 -0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_DTT_NaS_noNitrogen N.D. -0.5 N.D. -1.2 -0.9
carbon source L-Fucose (C) N.D. -2.1 N.D. -0.4 +0.1
phage DAC20_cps8_1MOI N.D. +0.1 N.D. -1.2 -1.4
mouse_post_colonization Post-colonization (Day 12) - Cage5;Mouse4 N.D. -1.8 N.D. -0.7 +0.2
mouse Post-colonization (Day 4) - Cage1C;Mouse1 N.D. -1.5 N.D. -0.8 +0.5
phage DAC23_cps8_0.1MOI N.D. -1.2 N.D. -0.9 +0.5
stress Varel_Bryant_medium_Glucose with Doxycycline hyclate 0.0001953125 mM N.D. -1.0 N.D. -1.0 +0.6
stress BHIS with Cephalothin 0.2 mM N.D. +0.8 N.D. -0.9 -1.0
stress BHIS with Cefoxitin 0.025 mM N.D. -0.8 N.D. -0.9 +1.2
mouse_post_colonization Post-colonization (Day 1) - Cage6;Mouse1 N.D. +0.9 N.D. +0.8 -1.6
carbon source Melibiose (C) N.D. -1.1 N.D. +1.0 +0.7
stress BHIS with Doxycycline hyclate 0.0001953125 mM N.D. +1.5 N.D. +0.5 -1.2
stress BHIS with Simvastatin 30 uM N.D. +1.8 N.D. +0.4 -0.7
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