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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT0308 and BT0309 are separated by 74 nucleotides
BT0309 and BT0310 overlap by 17 nucleotides
BT0310 and BT0311 are separated by 86 nucleotides
BT0311 and BT0312 are separated by 37 nucleotides
BT0308: BT0308 - putative glycosyl hydrolase (NCBI ptt file), at 370,710 to 371,414
BT0308
BT0309: BT0309 - Dihydrolipoamide dehydrogenase (NCBI ptt file), at 371,489 to 372,832
BT0309
BT0310: BT0310 - lipoate-protein ligase A (NCBI ptt file), at 372,816 to 373,535
BT0310
BT0311: BT0311 - lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (NCBI ptt file), at 373,622 to 374,992
BT0311
BT0312: BT0312 - 2-oxoisovalerate dehydrogenase beta subunit (NCBI ptt file), at 375,030 to 377,066
BT0312
Group
Condition
BT0308
BT0309
BT0310
BT0311
BT0312
survival
aerobic shaking 48 hr copy A
+0.1
-0.7
-1.4
-0.4
-1.0
carbon source
Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
-1.3
-0.6
+0.0
-0.6
+0.3
carbon source
Mannan from Saccharomyces cerevisiae; filtered 2.5 mg/ml (C)
-0.9
-0.7
+0.1
-0.3
-0.3
carbon source
D-Glucose 5 mg/ml (C)
-0.9
-0.5
+0.2
-0.4
-0.2
stress
BHIS with Chlorhexidine diacetate salt 0.0015625 mM
+0.2
-1.1
-0.3
-0.3
-0.4
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.2
-0.6
-0.8
+0.3
-0.5
stress
BHIS with Antimycin A 0.2 mM
+0.5
-1.5
+0.0
-0.2
-0.3
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.7
-0.4
+0.3
-0.5
-0.1
survival
aerobic shaking 48 hr copy B
+0.4
+0.2
-0.8
-0.2
-0.9
stress
BHIS with Dimetridazole 0.00625 mM
+0.7
-0.8
-0.3
-0.3
+0.0
stress
BHIS with Dimetridazole 0.0125 mM
-0.4
-0.5
-0.5
+0.3
+0.4
stress
Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
-0.7
+0.3
-0.7
+0.2
+0.4
carbon source
D-Glucose 20mM (C)
+0.5
-0.3
-1.0
+0.2
+0.2
stress
Varel_Bryant_medium_Glucose with Sulfaquinoxaline 0.1 mM
-0.1
+0.8
-0.6
-0.6
+0.6
mouse_peg_treatment
PEG (Day 2) - Cage5;Mouse1
+0.5
-0.4
-0.7
+0.2
+0.5
carbon source
Hyaluronic from Streptococcus equi
+1.1
-0.3
-0.6
-0.1
+0.0
stress
BHIS with Dimetridazole 0.025 mM
-0.3
-0.8
-0.0
+1.0
+0.4
stress
BHIS with Doxycycline hyclate 0.000390625 mM
+1.3
-1.0
-0.1
+0.2
+0.2
stress
Varel_Bryant_medium_Glucose with Sulfamethizole 0.2 mM
+0.7
+0.5
-0.3
-0.5
+0.2
phage
SJC15_cps8_1MOI
+0.2
+1.1
+0.2
-0.9
-0.1
phage
ARB14_cps1_0.1MOI
+0.5
+0.6
+0.3
-0.5
-0.1
stress
Varel_Bryant_medium_Glucose with Trimethoprim 0.0125 mM
-0.6
+0.3
+0.7
+0.2
+0.3
stress
BHIS with Vancomycin 0.016 mg/ml
+0.8
+0.4
-0.6
+0.0
+0.3
stress
BHIS with Thioridazine 0.0125 mM
+1.1
+0.5
+0.0
-0.5
+0.1
phage
SJC15_cps8_1MOI
+0.5
+0.5
+0.7
-0.0
-0.5
phage
SJC12_cps8_0.1MOI
+0.6
+0.7
+0.5
-0.2
-0.3
stress
BHIS with 5-Fluorouracil 0.2 mM
+0.2
+0.3
+0.8
-0.5
+0.6
stress
Varel_Bryant_medium_Glucose with 8-hydroxy-nitroquinoline 0.05 mM
-0.6
+0.8
+0.5
+0.1
+0.6
stress
BHIS with Chlorpromazine 0.1 mM
+1.3
+0.2
+0.5
-0.5
+0.2
stress
BHIS with Thioridazine 0.0125 mM
+0.7
+0.8
+0.5
-0.2
+0.3
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