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Fitness for 5 genes in
Bacteroides thetaiotaomicron VPI-5482
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BT0301 and BT0302 are separated by 15 nucleotides
BT0302 and BT0303 are separated by 149 nucleotides
BT0303 and BT0304 are separated by 271 nucleotides
BT0304 and BT0305 are separated by 3 nucleotides
BT0301: BT0301 - ATP-binding transport protein natA (Na+ ABC transporter) (NCBI ptt file), at 358,006 to 359,517
BT0301
BT0302: BT0302 - hypothetical protein (NCBI ptt file), at 359,533 to 360,234
BT0302
BT0303: BT0303 - putative patatin-like phospholipase (NCBI ptt file), at 360,384 to 362,600
BT0303
BT0304: BT0304 - acriflavine resistance protein A precursor (NCBI ptt file), at 362,872 to 364,107
BT0304
BT0305: BT0305 - putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file), at 364,111 to 367,215
BT0305
Group
Condition
BT0301
BT0302
BT0303
BT0304
BT0305
stress
BHIS with Simvastatin 30 uM
-0.2
-2.4
-2.5
+0.1
-0.7
mouse_post_colonization
Post-colonization (Day 14) - Cage7;Mouse3
-0.1
-1.2
-1.0
-0.4
-0.5
mouse_post_colonization
Post-colonization (Day 12) - Cage7;Mouse3
-0.2
-0.4
-1.2
-0.9
-0.5
mouse_peg_treatment
PEG (Day 2) - Cage5;Mouse1
-0.7
-0.6
-1.0
-0.3
-0.2
stress
BHIS with Rifampicin 0.0000244140625 mM
+0.2
-0.7
-1.3
-0.6
-0.4
mouse_post_colonization
Post-colonization (Day 2) - Cage4;Mouse1
-0.3
+0.1
-0.3
-1.2
-0.9
stress
BHIS with Doxycycline hyclate 0.0001953125 mM
-0.1
-1.9
-0.3
+0.0
-0.2
stress
BHIS with Fusidic 0.004 mg/ml
-0.2
-1.0
-2.6
+1.1
+0.4
mouse_post_colonization
Post-colonization (Day 3) - Cage1;Mouse2
-0.1
-0.7
+0.2
-1.2
-0.5
mouse_post_colonization
Post-colonization (Day 12) - Cage4;Mouse1
-0.4
+0.3
-1.4
-0.6
-0.1
mouse_peg_treatment
PEG (Day 2) - Cage4;Mouse1
+0.1
-0.7
-0.9
-0.8
+0.1
stress
BHIS with Simvastatin 30 uM
-0.6
-0.1
-1.6
+0.6
-0.4
stress
BHIS with Chlorpromazine 0.1 mM
-0.3
-0.3
-1.8
+0.2
+0.2
mouse_post_colonization
Post-colonization (Day 12) - Cage2;Mouse1
-0.4
+0.5
-0.8
-0.5
-0.3
stress
BHIS with Dimetridazole 0.025 mM
-0.5
-1.2
+1.1
-0.5
-0.5
phage
SJC16_cps8_1MOI
+0.3
-0.9
-0.3
-1.0
+0.3
stress
BHIS with Rifampicin 0.000048828125 mM
+0.1
+0.5
-1.2
-0.5
-0.3
carbon source
Hyaluronic from Streptococcus equi
-0.3
-1.5
-0.2
+0.7
+0.1
stress
BHIS with Fusidic 0.004 mg/ml
-0.4
-0.3
-1.3
+0.6
+0.2
carbon source
D-Glucose 20mM (C)
+0.3
-1.5
-0.5
+0.6
+0.1
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
-0.5
+0.8
-1.3
+0.1
+0.3
carbon source
Hyaluronic from Streptococcus equi
-0.3
-0.8
-0.4
+0.4
+0.6
stress
BHIS with Cephalothin 0.1 mM
-0.1
+1.3
-0.5
-0.6
+0.2
stress
BHIS with Chlorpromazine 0.1 mM
+0.1
+1.4
-1.3
+0.1
+0.5
stress
BHIS with Sulfamonomethoxine 0.1 mM
-0.3
+1.2
-0.5
+0.2
+0.5
stress
Varel_Bryant_medium_Glucose with Econazole nitrate salt 0.025 mM
-0.5
+1.3
-0.4
+0.4
+0.4
stress
BHIS with Sulfamonomethoxine 0.2 mM
-0.1
+1.5
-0.7
+0.4
+0.4
stress
BHIS with Trimethoprim 0.00625 mM
+0.3
+1.5
-0.4
-0.0
+0.5
stress
BHIS with 5-Fluorouracil 0.1 mM
-0.1
+1.9
-0.1
+0.3
+0.3
stress
BHIS with Dimetridazole 0.00625 mM
+0.6
+1.4
+0.6
+0.1
-0.1
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